Re: [Bioc-devel] Utility functions and bug fixes for edgeR/DESeq

2012-11-26 Thread Gordon K Smyth
m: "Ryan C. Thompson" To: bioc-devel@r-project.org Subject: [Bioc-devel] Utility functions and bug fixes for edgeR/DESeq In my work, I've developed a few useful functions relating to edgeR and DESeq. First, I wrote a version of glmQLFTest that does not throw errors on zero-count ge

[Bioc-devel] Utility functions and bug fixes for edgeR/DESeq

2012-11-20 Thread Gordon K Smyth
19 Nov 2012 18:08:04 -0800 From: "Ryan C. Thompson" To: bioc-devel@r-project.org Subject: [Bioc-devel] Utility functions and bug fixes for edgeR/DESeq In my work, I've developed a few useful functions relating to edgeR and DESeq. First, I wrote a version of glmQLFTest that does not th

[Bioc-devel] Utility functions and bug fixes for edgeR/DESeq

2012-11-19 Thread Ryan C. Thompson
In my work, I've developed a few useful functions relating to edgeR and DESeq. First, I wrote a version of glmQLFTest that does not throw errors on zero-count genes. See the comment for details on what exactly it does: ## This version of glmQLFTest excludes genes with zero counts in all ## samp