Good day,
Thanks. I'll use the [limma] specifier to avoid the Warning from the build
system.
--
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
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Thank you, the reproducible example helps one think through things.
For what it's worth the warning can be generated via
> tools:::.check_Rd_xrefs(dir = "~/Downloads/Tester")
Looking at the code and reflecting on the issue, since limma is in the
Suggests: field, it is not guaranteed to be in
Good day,
I created a minimalist package that demonstrates the issue and it is attached
to this letter. After using R CMD build, the subsequent R CMD check process
emits one warning.
--
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
Tester
On 05/11/2018 06:00 PM, Dario Strbenac wrote:
Good day,
limma was installed using biocLite, so it would be built before R CMD check was
run. I could summarise all of the relevant information and send to
R-package-devel mailing list to check if it is a bug.
the 'relevant information' needs
Good day,
limma was installed using biocLite, so it would be built before R CMD check was
run. I could summarise all of the relevant information and send to
R-package-devel mailing list to check if it is a bug.
--
Dario Strbenac
University of Sydney
Camperdow
I'm not really sure about this, but Writing R Extensions says about
these forms of \link that they are seldom needed, except when linking to
"not-yet-installed packages". I think if you were to have installed
limma without first building it (e.g., R CMD INSTALL limma rather than R
CMD INSTALL l
Good day,
Indeed, it is in the Suggests component of the dependency specification. I
didn't find any extra requirements for this case in the Cross-references
section of Writing R Extensions, so I'm unsure of where to read about the rule.
--
Dario Strbenac
Uni
On 05/11/2018 01:00 AM, Dario Strbenac wrote:
Good day,
I have documented a parameter that is linked to lmFit's documentation.
\item{...}{Optional settings that are passed to \code{\link{lmFit}}.}
The package checking process displays a warning.
* checking Rd cross-references ... WARNING
Mi
Good day,
I have documented a parameter that is linked to lmFit's documentation.
\item{...}{Optional settings that are passed to \code{\link{lmFit}}.}
The package checking process displays a warning.
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'limma
