;> ==23105==by 0x4F31621: do_dotcall (dotcode.c:1251)
>> ==23105==by 0x4F6FA8A: Rf_eval (eval.c:713)
>> ==23105==by 0x4F88101: do_begin (eval.c:1806)
>> ==23105==by 0x4F6F8B7: Rf_eval (eval.c:685)
>> ==23105==by 0x4F85303: Rf_applyClosure (eval.c:1134)
>>
chael Love
Sent: Monday, February 1, 2016 3:35 PM
To: Dan Tenenbaum
Cc: bioc-devel; Hervé Pagès
Subject: Re: [Bioc-devel] TIMEOUTs on Morelia
I was able to construct a minimal example where it seems the bug originates
from SummarizedExperiment:
library(SummarizedExperiment)
se <- SummarizedEx
From: Bioc-devel on behalf of Michael Love
Sent: Monday, February 1, 2016 3:35 PM
To: Dan Tenenbaum
Cc: bioc-devel; Hervé Pagès
Subject: Re: [Bioc-devel] TIMEOUTs on Morelia
I was able to construct a minimal example where it seems the bug originates
from SummarizedExpe
complicated issue going on. I
>> will investigate and report back here.
>>
>> Thanks,
>> Dan
>>
>>
>> - Original Message -
>> > From: "Dan Tenenbaum"
>> > To: "Hartley, Stephen (NIH/NHGRI) [F]"
>> > C
t back here.
>
> Thanks,
> Dan
>
>
> - Original Message -
> > From: "Dan Tenenbaum"
> > To: "Hartley, Stephen (NIH/NHGRI) [F]"
> > Cc: "bioc-devel"
> > Sent: Monday, February 1, 2016 10:11:54 AM
> > Subject: Re
Sent: Monday, February 1, 2016 10:11:54 AM
> Subject: Re: [Bioc-devel] TIMEOUTs on Morelia
> I think the morelia server was overloaded, so it was restarted yesterday
> around
> 11PM Seattle time, so I hope we will see fewer TIMEOUTs in today's build
> report.
> Dan
>
>
&
The current devel build for DESeq2 has status TIMEOUT on Morelia. This is odd
since the package builder gives it 40 minutes to complete, and it finishes in
less than 5 on zin2 and muscato2.
A bunch of packages that depend on or suggest DESeq2 also timeout on Morelia:
DiffBind, derfinder, DChIPR
Sent: Monday, February 1, 2016 10:06:11 AM
> Subject: [Bioc-devel] TIMEOUTs on Morelia
> The current devel build for DESeq2 has status TIMEOUT on Morelia. This is odd
> since the package builder gives it 40 minutes to complete, and it finishes in
> less than 5 on zin2 and muscato2.
>
