Behalf Of
Michael Lawrence
>Sent: Tuesday, April 01, 2014 9:21 AM
>To: bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org>
<mailto:bioc-devel@r-project.__org
<mailt
seq_len(pmin(__elementLengths(cvg), 5))]
>>
>>
>>RleList of length 3
>>$chr1
>>integer-Rle of length 5 with 2 runs
>> Lengths: 4 1
>> Values : 1 2
>>
>>
>>$chr2
>>integer-Rle of length
Hi Herve,
I think you read my mind. However, now I have managed to come to a
slightly different bump. I don't want to use averaged values, per se (I
think there's a UCSC tool of some sort that would do that), but rather I
want to let Gviz or trackViewer plot both the individiual data points and
On 04/01/2014 10:40 AM, Tim Triche, Jr. wrote:
Hi all,
The following is tangentially related, but hopefully the answer will be useful
to others (both directly and via my package, which prompts this)...
Suppose I do this:
dat <- GRangesList(
lapply( bigWigFileNames, import,
select
Hi Tim,
There is probably too much guess work for me to really be able to
help... However, and FWIW, in Bioc-devel the 'asRle' argument of
import() has been replaced by the 'as' argument and it can be set
to "GRanges", "RleList", or "NumericList". Be aware that, surprisingly,
if you specify a 'se
nces@r-__project.org
<mailto:bioc-devel-boun...@r-project.org>] On Behalf Of
Michael Lawrence
>Sent: Tuesday, April 01, 2014 9:21 AM
>To: bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org>
>Subjec
t;
>> On Tue Apr 1 09:24:51 2014, Cook, Malcolm wrote:
>>
>>> in the mean time,
>>>
>>> lapply(`[`,x,IntegerList(1:5))
>>>
>>> ??
>>>
>>> >-Original Message-
>>> >From: bioc-devel-boun...@r-p
gt;From: bioc-devel-boun...@r-project.org
[mailto:bioc-devel-boun...@r-project.org] On Behalf Of Michael Lawrence
>Sent: Tuesday, April 01, 2014 9:21 AM
>To: bioc-devel@r-project.org
>Subject: [Bioc-devel] Subsetting Lists by Lists
>
>Mostly to Herve:
>
>Sometimes we want
Hi Michael,
On 04/01/2014 07:21 AM, Michael Lawrence wrote:
Mostly to Herve:
Sometimes we want to pluck the first 1, or 10, or whatever elements from
each element of a list. If I had a list 'x', I thought I could do this with:
x[IntegerList(1:5)]
But it only gives elements 1:5 from x[[1]], no
Hi all,
The following is tangentially related, but hopefully the answer will be useful
to others (both directly and via my package, which prompts this)...
Suppose I do this:
dat <- GRangesList(
lapply( bigWigFileNames, import,
selection=someRanges ) )
Now I have a GRangesList of
:bioc-devel-boun...@r-project.org] On Behalf Of Michael Lawrence
>Sent: Tuesday, April 01, 2014 9:21 AM
>To: bioc-devel@r-project.org
>Subject: [Bioc-devel] Subsetting Lists by Lists
>
>Mostly to Herve:
>
>Sometimes we want to pluck the first 1, or 10, or whatever
bject: [Bioc-devel] Subsetting Lists by Lists
>
>Mostly to Herve:
>
>Sometimes we want to pluck the first 1, or 10, or whatever elements from
>each element of a list. If I had a list 'x', I thought I could do this with:
>
>x[IntegerList(1:5)]
>
>But it only
Mostly to Herve:
Sometimes we want to pluck the first 1, or 10, or whatever elements from
each element of a list. If I had a list 'x', I thought I could do this with:
x[IntegerList(1:5)]
But it only gives elements 1:5 from x[[1]], not each element of 'x'. In
other words, I thought the index woul
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