Re: [Bioc-devel] Special meta column name in GRanges cause invalid object

2018-08-04 Thread Hervé Pagès
Thanks Jialin for the report. This should be addressed in GenomicRanges 1.33.13: https://github.com/Bioconductor/GenomicRanges/commit/9fa12796dcb076ddb34b6f2c8115e358d9a0aeab Other "show" methods suffer from the same problem (e.g. methods for IRanges, Hits, GAlignments, etc...) and will also ne

[Bioc-devel] Special meta column name in GRanges cause invalid object

2018-07-25 Thread marl...@gmx.cn
Dear bioc-devel, I am not sure whether I should bring this up. This is a problem that would happen only in some rare cases. When the name of a meta column of GRanges is the name of an argument in the data.frame function, such as stringsAsFactors, the GRanges will not able to print and some func