I've no idea what exactly I did or how I did it, but I'd somehow ended
up with some core packages out of sync. Fixed with
BiocInstaller::biocValid() and following advice therein. Sorry for the
noise.
On 20 June 2016 at 21:26, Martin Morgan wrote:
> On 06/20/2016 09:22 PM, Leonardo Collado Torres
On 06/20/2016 09:22 PM, Leonardo Collado Torres wrote:
I was going to say that for the tutorial users it might be easier to
use devtools::install_github('Bioconductor-mirror/GenomicRanges')
FWIW biocLite("Bioconductor-mirror/GenomicRanges") invokes
install_github(). Martin
rather than svn.
I was going to say that for the tutorial users it might be easier to
use devtools::install_github('Bioconductor-mirror/GenomicRanges')
rather than svn.
However, from
https://github.com/Bioconductor-mirror/GenomicRanges/blob/master/DESCRIPTION#L13
you can see that it's outdated.
On Mon, Jun 20, 2
Hi Pete,
Because of various issues with the builds, some recent changes to
some core packages have not been able to propagate. So for example
the version of GenomicRanges currently available via biocLite() is
1.25.4, which is lagging behind the version that is in svn (1.25.8).
I think this could
I think this is a recent break. I'm mostly concerned because I need to
use this "broken" functionality in a tutorial for BioC2016 this week
and it would require changes to package internals, not the vignette,
in order to fix this at my end.
library(SummarizedExperiment)
se <- SummarizedExperiment(
