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De : Hervé Pagès [hpa...@fredhutch.org]
Date d'envoi : mercredi 1 juillet 2015 20:25
À : COMMO Frederic; bioc-devel@r-project.org
Objet : Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37
Salut Frédéric,
I had this on my list for a long time so here it goes
e d'envoi : mercredi 1 juillet 2015 20:25
À : COMMO Frederic; bioc-devel@r-project.org
Objet : Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37
Salut Frédéric,
I had this on my list for a long time so here it goes. Starting with
BSgenome 1.36.2 (in release) and 1.37.3 (in devel), a new
Salut Frédéric,
I had this on my list for a long time so here it goes. Starting with
BSgenome 1.36.2 (in release) and 1.37.3 (in devel), a new API is
available for querying a SNPlocs object:
snpsBySeqname()
snpsByOverlaps()
snpsById()
Note that this is the new recommended API. In partic
di 29 juin 2015 12:50
À : bioc-devel@r-project.org
Objet : [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37
Hi,
I'm trying to map rsi Ids provided in the Affymetrix cytoScanHD arrays, using
the 'SNPlocs.Hsapiens.dbSNP142.GRCh37' package, and rsid2loc().
It turns out that some of these
Hi,
I'm trying to map rsi Ids provided in the Affymetrix cytoScanHD arrays, using
the 'SNPlocs.Hsapiens.dbSNP142.GRCh37' package, and rsid2loc().
It turns out that some of these rsi ids are unknown, e.g. rsi7553394, and
rsi2loc() fails on the entire search.
It would be nice if rsi2loc() would
