Re: [Bioc-devel] Restrictions on findOverlaps parameters with SummarizedExperiment objects

2014-04-11 Thread Peter Hickey
Thanks for the explanation and the update, Martin. Cheers, Pete - Original Message - From: Martin Morgan To: Peter Hickey , bioc-devel@r-project.org Sent: Sat, 12 Apr 2014 06:45:46 +1000 (EST) Subject: Re: [Bioc-devel] Restrictions on findOverlaps parameters with SummarizedExperiment

Re: [Bioc-devel] Restrictions on findOverlaps parameters with SummarizedExperiment objects

2014-04-11 Thread Martin Morgan
On 04/10/2014 11:44 PM, Peter Hickey wrote: Could the findOverlaps method with signatures involving SummarizedExperiment objects please be extended to allow the full range of "type" and "select" arguments"? Please see the examples below for situations where the parameter choices seem unduly res

[Bioc-devel] Restrictions on findOverlaps parameters with SummarizedExperiment objects

2014-04-10 Thread Peter Hickey
Could the findOverlaps method with signatures involving SummarizedExperiment objects please be extended to allow the full range of "type" and "select" arguments"? Please see the examples below for situations where the parameter choices seem unduly restrictive. Are there reasons for these restric