Re: [Bioc-devel] Resource temporarily unavailable error with rtracklayer

2020-07-20 Thread Michael Lawrence via Bioc-devel
Please raise an issue on the rtracklayer GitHub. Thanks, Michael On Sun, Jul 19, 2020 at 8:20 PM Charles Plessy wrote: > > On 15/07/2020 10:53, Charles Plessy wrote: > > On 14/07/2020 19:56, Vincent Carey wrote: > >> Can you post an example dataset that triggers the error reproducibly? > > > > h

Re: [Bioc-devel] Resource temporarily unavailable error with rtracklayer

2020-07-19 Thread Charles Plessy
On 15/07/2020 10:53, Charles Plessy wrote: On 14/07/2020 19:56, Vincent Carey wrote: Can you post an example dataset that triggers the error reproducibly? here it is: https://www.dropbox.com/s/ai9itm586clt4y9/gp.Rds?dl=0 It is a GPos object; interestingly I just realised that export.bw will

Re: [Bioc-devel] Resource temporarily unavailable error with rtracklayer

2020-07-14 Thread Charles Plessy
On 14/07/2020 19:56, Vincent Carey wrote: Can you post an example dataset that triggers the error reproducibly? Dear Vincent, here it is: https://www.dropbox.com/s/ai9itm586clt4y9/gp.Rds?dl=0 It is a GPos object; interestingly I just realised that export.bw will not crash if I convert it to

Re: [Bioc-devel] Resource temporarily unavailable error with rtracklayer

2020-07-14 Thread Vincent Carey
Can you post an example dataset that triggers the error reproducibly? On Tue, Jul 14, 2020 at 4:44 AM Charles Plessy wrote: > Hello, > > a user of the CAGEr package reported an error that occurs when it calls > the `export.bw` function of rtracklayer: > > rsession: 1730343 1730344 doesn't inters

[Bioc-devel] Resource temporarily unavailable error with rtracklayer

2020-07-14 Thread Charles Plessy
Hello, a user of the CAGEr package reported an error that occurs when it calls the `export.bw` function of rtracklayer: rsession: 1730343 1730344 doesn't intersect 1892288 1899678, chromId 6 chromSize 5022195: Resource temporarily unavailable Error in isSingleString(path) : UCSC library oper