Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

gards, Alan. From: Mike Smith Sent: 09 March 2021 11:14 To: Murphy, Alan E Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning I've used something like this approach i

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

t: Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning I've used something like this approach in the past. All the normal caveats about making sure you've got a backup apply. Find the names of largest objects in the pack file (not necessarily in size order). In th

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

Kind regards, > Alan. > > From: stefano > Sent: 08 March 2021 22:18 > To: Nitesh Turaga > Cc: Murphy, Alan E ; bioc-devel@r-project.org < > bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] Removal of large items in git history

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

large items in git history - BiocCheck warning This email from mangiolastef...@gmail.com originates from outside Imperial. Do not click on links and attachments unless you recognise the sender. If you trust the sender, add them to your safe senders list<https://spam.ic.ac.uk/SpamConsole/Sen

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

Hello, you can use bfg-repo-cleaner , have a read to this document, in the section "eliminate big files from repo" https://docs.google.com/document/d/1jxg7KCMQq3kiCcvodQk9JgtU51LqczOwLit1gHiTP4Q/edit?usp=sharing Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Lab

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

Hi Alan, Did you manage to solve this? There seems to be objects in your git repo which are bigger than the size which is required by Bioconductor for a software package. Please check hidden files as well. One test you can do is, to clone your package from github and see how much MB are dow

[Bioc-devel] Removal of large items in git history - BiocCheck warning

Hi all, I am working on the development of EWCE for submission to Bioconductor. I have removed some large objects from the package and moved them to a separate ExperimentHub package however, after their removal, I got a BiocCheck large file warning. To deal