space is obviously much larger for the same k.
I hope that helps. If you have any further questions, please let us know.
Best regards,
Ulrich
Message-ID:
From: Rodrigo Bertollo de Alexandre
To: "bioc-devel@r-project.org"
Date: Thu, 27 Nov 2014 21:38:39 -0200
Subject: [Bioc-devel]
ou have any further questions, please let us know.
Best regards,
Ulrich
Message-ID:
From: Rodrigo Bertollo de Alexandre
To: "bioc-devel@r-project.org"
Date: Thu, 27 Nov 2014 21:38:39 -0200
Subject: [Bioc-devel] Regarding the function: oligonucleotideFrequency for
k-mers > 11 bps
I've seen that it is almost impossible to work with k-mers as big as 13 with
this function. This is mainly because this function doesn't create a list of
k-mers from the sequence but from all possible combinations.
This is basically a bug, since in a big sequence of 1000 bps the maximum number
o
