ject.org, "david Gomez-Cabrero"
>
> Sent: Tuesday, October 7, 2014 3:53:40 AM
> Subject: Re: [Bioc-devel] RMarkdown for vignettes (builder issues)
>
> Sorry to re-open this thread, but it appears that this configuration
> works with some builders but not others. The
>>
>>
>> - Original Message -
>>> From: "Henrik Bengtsson"
>>> To: jmac...@u.washington.edu
>>> Cc: bioc-devel@r-project.org
>>> Sent: Friday, October 3, 2014 6:56:59 AM
>>> Subject: Re: [Bioc-devel] RMarkdown for vignettes
>&
: Friday, October 3, 2014 6:56:59 AM
>> Subject: Re: [Bioc-devel] RMarkdown for vignettes
>>
>> I think it requires Bioc core to make a statement that pandoc will be
>> added
>> to the list of external software that can be assume to exist on the
>> servers.
- Original Message -
> From: "Henrik Bengtsson"
> To: jmac...@u.washington.edu
> Cc: bioc-devel@r-project.org
> Sent: Friday, October 3, 2014 6:56:59 AM
> Subject: Re: [Bioc-devel] RMarkdown for vignettes
>
> I think it requires Bioc core to make a statem
I think it requires Bioc core to make a statement that pandoc will be added
to the list of external software that can be assume to exist on the servers.
If it is also expected that users should be able to rebuild all
vignettes/documents themselves, then that assumption has to be extended to
the us
Hi Gordon,
Sean Davis has something about this on his blog:
http://watson.nci.nih.gov/~sdavis/blog/convert_from_sweave_to_r_markdown_vignettes/
Best,
Jim
On Fri, Oct 3, 2014 at 9:06 AM, Gordon Ball wrote:
> Hello
>
> Is it possible to use (RStudio's) rmarkdown package as a vignette
> build
Hello
Is it possible to use (RStudio's) rmarkdown package as a vignette
builder for the upcoming release?
ie, with the (at least locally working) configuration
DESCRIPTION
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
vignette/vignette.Rmd
---
title: ...
out
