A Bioconductor package cannot depend on act version of a package that is not
available in Bioconductor or CRAN. So he needs to make sure this new version if
available in CRAN ASAP.
On February 25, 2016 8:48:49 AM PST, Luca De Sano
wrote:
>I think that the answer of Marco Scutari, the maintai
I think that the answer of Marco Scutari, the maintainer of bnlearn, is the
best solution.
Using bnlearn 4.0-20160212 everything works in the right way:
Status: 0 ERROR, 0 WARNINGs, 0 NOTE
Thank you
Marco Scutari says:
*Hi Morgan, Hi Luca, this problem is known to me and I have fixe
Also not an expert, but I've looked at the dependencies and realized the
following:
The problem is likely due to import of Rgraphviz before bnlearn. Rgraphviz
is dependent on graph, and graph also has a nodes generic. When bnlearn
gets loaded, the nodes generic from the graph package is not visibl
Rgraphviz
import in the generated NAMESPACE, which causes this problem.
Dan
- Original Message -
> From: "Luca De Sano"
> To: "Vincent Carey"
> Cc: "bioc-devel"
> Sent: Thursday, February 25, 2016 7:56:58 AM
> Subject: Re: [Bioc-devel] R CMD
The problem is that the NAMESPACE is regenerated every time I execute the
document() command.
At the moment, in the description file I've added bnlean
Depends:
R (>= 3.1),
bnlearn,
doParallel,
to prevent this:
> library(devtools)
> document()
Updating TRONCO documentation
Loading TR
I am evidently not expert in this topic. However I was able to get past
the warning/halt you identified by moving the importFrom(bnlearn,...)
statements to the top of the NAMESPACE. I cannot see in the WRE manual how
the order of namespace imports/exports should be controlled. Other minds
will b
Hi all,
I'm working on a package named TRONCO (
http://bioconductor.org/packages/devel/bioc/html/TRONCO.html ) which was
released last year on bioconductor. Everytime I run R CMD check I get these
two warnings:
* checking whether the namespace can be loaded with stated dependencies ...
WARNING
Err
