hi Jarod,
Please take a look at the beginner vignette for DESeq2. We explain a
lot of the questions you are asking, including how to subset the
object based on adjusted p-value. Please take a look a my previous
email as well, I demonstrated how to subset the results object. As you
can see in the v
Dear All I don't understand. I want to extract only genes have a fold-change
more than 0.5
I use this comand but I have all the genes inside:
resGA2 <- results(dds, lfcThreshold=.5, altHypothesis="greaterAbs") #greater
dim(resGA)
>> [1] 62893 6
>>> dim(resGA2)
>> [1] 62893 6
>>> dim(resGA
