Dear Professo
Thanks for the clarification.
I'd like to use that method as a starting list for do some enrichment analisys
using SPIA.
res <-results(dds)
ddsNoPrior <- DESeq(ddHTSeq, betaPrior=FALSE) #only for lessABs
resGA <- results(ddsNoPrior, lfcThreshold=.5, altHypothesis="lessAbs")
#great
Hi Jarod
Mike overlooked one point in your question
On 11/07/14 12:05, jarod...@libero.it wrote:
If I interested in the genes that have a foldchange more than 0.5 and 2 I need
to use this comand is it right?
DESeq2 reports al fold changes on a log2 scale. So your limits of 0.5
and 2 for unlo
Dear Dr,
Thanks so much for clarification!!!
So I try the test of log fold change but I'm bit confusion on the results:
If I interested in the genes that have a foldchange more than 0.5 and 2 I need
to use this comand is it right?
ddsNoPrior <- DESeq(ddHTSeq, betaPrior=FALSE) #only for lessABs
re
