Re: [Bioc-devel] R: R: R: Errors updating DaMiRseq package

2017-09-27 Thread Hervé Pagès
Excellent! Thanks Andrzej. H. On 09/27/2017 01:05 PM, Andrzej Oleś wrote: Thanks Hervé for troubleshooting! This should be now fixed in BiocStyle 2.5.39, for details see the discussion at https://github.com/Bioconductor/BiocStyle/issues/36

Re: [Bioc-devel] R: R: R: Errors updating DaMiRseq package

2017-09-27 Thread Andrzej Oleś
Thanks Hervé for troubleshooting! This should be now fixed in BiocStyle 2.5.39, for details see the discussion at https://github.com/Bioconductor/BiocStyle/issues/36. Cheers, Andrzej On Wed, Sep 27, 2017 at 8:42 PM, Hervé Pagès wrote: > It's better to discuss this on the bioc-devel list, Othe

Re: [Bioc-devel] R: R: R: Errors updating DaMiRseq package

2017-09-27 Thread Hervé Pagès
It's better to discuss this on the bioc-devel list, Others might benefit. > I really did not know that latex2 was deprecated. I will modify > the vignette ASAP. > > Many thanks in advance. > > Mattia To troubleshoot this you can proceed in 2 steps: 1) First generate the .tex file with 'R

Re: [Bioc-devel] R: R: R: Errors updating DaMiRseq package

2017-09-27 Thread Hervé Pagès
Hi Mattia, Please use BiocStyle::latex instead of BiocStyle::latex2 in your vignette. The latter is deprecated. That seems to make the LaTeX Error go away. Cheers, H. On 09/26/2017 01:44 AM, Mattia Chiesa wrote: Dear all, I have seen that my package (DaMiRseq) is in status "ERROR" after my la

[Bioc-devel] R: R: R: Errors updating DaMiRseq package

2017-09-26 Thread Mattia Chiesa
Dear all, I have seen that my package (DaMiRseq) is in status "ERROR" after my last little modifications. It's a bit strange for me because locally everything is all right. Looking at the build report ( http://bioconductor.org/checkResults/devel/bioc-LATEST/DaMiRseq/tokay1-buildsrc.html ), it s