On 11/12/2016 12:28 PM, Ioannis Vardaxis wrote:
Hi,
I don¹t get any error in R CMD build pkg at all, I only get a note in the
BiocCheck that the macro '\insertRef¹ is unknown. However it is only a
note, I have no errors nor warnings.
Is it ok if I submit the package like that? I can¹t find any
Hi,
I don¹t get any error in R CMD build pkg at all, I only get a note in the
BiocCheck that the macro '\insertRef¹ is unknown. However it is only a
note, I have no errors nor warnings.
Is it ok if I submit the package like that? I can¹t find any solution.
Output:
> system("R CMD check --no-bu
Create a folder \inst and place the REFERENCES.bib in it. (see attached)
Then in the R function add: #’ @references \insertRef{ENCODE_1}{PkgA}.
You have to have the Rdpack installed.
--
Ioannis Vardaxis
Stipendiat IMF
NTNU
On 07/11/16 13:49, "Ioannis Vardaxis"
wrote:
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>On 07/11/1
On 11/08/2016 08:26 AM, Ioannis Vardaxis wrote:
Create a folder \inst and place the REFERENCES.bib in it. (see attached)
Then in the R function add: #’ @references \insertRef{ENCODE_1}{PkgA}.
You have to have the Rdpack installed.
when I do that (see
https://github.com/mtmorgan/PkgA/tree/pars
On 11/07/2016 07:35 AM, Ioannis Vardaxis wrote:
Ok,
Consider an R.script with a function and roxygen entries above the
function out the author etc. One of the entries there is the following: #'
@references \insertRef{key}{pkg}.
This macro is given by the Rdpack R package for using references in
Ok,
Consider an R.script with a function and roxygen entries above the
function out the author etc. One of the entries there is the following: #'
@references \insertRef{key}{pkg}.
This macro is given by the Rdpack R package for using references in the
help pages. Where I have created a REFERENCES.
On 11/07/2016 05:26 AM, Ioannis Vardaxis wrote:
Hi,
I was Rechecking the package folder and not the built version. Now it
works, thanks.
The warning I get for the references is the following:
Warning in parse_Rd(manpage) :
/var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw4gn/T//RtmpNOtV3V/MACPET/m
Hi,
I was Rechecking the package folder and not the built version. Now it
works, thanks.
The warning I get for the references is the following:
Warning in parse_Rd(manpage) :
/var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw4gn/T//RtmpNOtV3V/MACPET/man/sum
mary.Rd:78: unknown macro '\insertRef'
On 11/06/2016 06:10 PM, Ioannis Vardaxis wrote:
Hi,
For the references I just used @references \insertRef{key}{pkg}, and
although it shows up in the ??pkg::function help, I get an error in
biocCheck
it's not enough to say that you got an error, because there are many
possible errors. What err
Hi,
For the references I just used @references \insertRef{key}{pkg}, and
although it shows up in the ??pkg::function help, I get an error in
biocCheck
For the vignettes, my vignette is generated without any errors. What I get
as en error in Rcheck is that: “From R version >=3.2 vignettes is requi
On 11/06/2016 04:54 PM, Ioannis Vardaxis wrote:
Thanks for the answer,
I have some other questions about BiocCheck.
First I get the following warning:
* This is a software package, checking vignette directories...
* ERROR: 'vignettes' directory!
I have my vignettes directory in the inst/d
Thanks for the answer,
I have some other questions about BiocCheck.
First I get the following warning:
* This is a software package, checking vignette directories...
* ERROR: 'vignettes' directory!
I have my vignettes directory in the inst/doc/vignettes. If I change the
directory and place
On 11/05/2016 11:12 AM, Ioannis Vardaxis wrote:
Hi,
When I upload my package to Github does the evaluation process start
immediately? Or do I have to ask for it?
follow the instructions at
https://github.com/Bioconductor/Contributions
when the issue is opened, someone (usually within 24
Hi,
When I upload my package to Github does the evaluation process start
immediately? Or do I have to ask for it?
Furthermore, during the evaluation process do I get feedback about the
dependencies of my package etc? I have those in my description file, but maybe
they should be placed a little
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