Re: [Bioc-devel] Question: error in makeTxDbFromUCSC

2019-01-28 Thread Pages, Herve
Hi there, I answered this yesterday on the support site:   https://support.bioconductor.org/p/117265/#117346 Cheers, H. On 1/26/19 05:13, Vincent Carey wrote: > If I am not mistaken the same problem is on the support site and I provided > some > commentary at > https://urldefense.proofpoint.

Re: [Bioc-devel] Question: error in makeTxDbFromUCSC

2019-01-26 Thread Vincent Carey
If I am not mistaken the same problem is on the support site and I provided some commentary at https://support.bioconductor.org/p/117265/#117312 Let's keep the discussion there. The "problem" seems to be upstream at UCSC. There may be a design approach that avoids the risk of asynchrony between

[Bioc-devel] Question: error in makeTxDbFromUCSC

2019-01-25 Thread 陈施航
Hi GenomicFeatures support, I am Shihang Chen, a phD student at the University of Tokyo, using GenomicFeatures for ChIPSeeker. I run into a problem when I was using makeTxDbFromUCSC, and really need your help. After I run txdb=makeTxDbFromUCSC(genome="hg19",tablename="refGene") I got this error.