> We have been using snakemake (python-based, but essentially a domain
> language) with some pretty nice results. Nextflow (groovy-based) and Toil
> are another couple that I am watching closely. The Broad just released WDL
> and associated executors. And common-workflow-language (CWL) is gai
On Mon, Jun 20, 2016 at 11:36 AM, Sean Davis wrote:
> Hi, Elena.
>
> What do your pipelines need to do?
The idea behind our system is to be as general as possible. We are
mainly interested in human genomic/transcriptomic...we stem from
standard differential expression analyses
on microarray/RNAse
Hi,
TL;DR: what do you use to manage workflows and pipelines for you research? Knitr
or similar? Galaxy? Taverna?
Long version:
in my lab we are thinking about restyling our pipeline management
system and would like to exploit as much as possible the wealth of
annotations available in the Annota
