Re: [Bioc-devel] Package warning due to function replacement

2016-09-23 Thread Michael Lawrence
You'll need to either `importFrom(Biobase, only, the, symbols, needed)` or use the `except="combine"` argument to `import()`. On Fri, Sep 23, 2016 at 4:59 AM, THEVENOT Etienne 207099 wrote: > Dear Bioc Team, > > First of all thanks a lot again for all the time you spend developing and > maintain

Re: [Bioc-devel] Package warning due to function replacement

2016-09-23 Thread Kasper Daniel Hansen
In general you can assume this to be the case for core functionality like the stuff in Biobase. What you should do however, since combine() is an S4 method, is import the S4 method from BiocGenerics. In fact, it is a good idea to check which generics are defined in BiocGenerics and consider wheth

[Bioc-devel] Package warning due to function replacement

2016-09-23 Thread THEVENOT Etienne 207099
Dear Bioc Team, First of all thanks a lot again for all the time you spend developing and maintaining the Bioc repository. I recently added 'Biobase' as "suggests" in the 'biosigner' package in order to have the biosign method work on 'ExpressionSet' objects (devel version of 'biosigner'). Si