Re: [Bioc-devel] Package reference manuals in html

2016-12-28 Thread Laurent Gatto
>> >> The web site is generated by https://github.com/Bioconductor/ >> bioconductor.org, with the style sheet at https://github.com/ >> Bioconductor/bioconductor.org/blob/master/assets/style/ >> bioconductor.css. The package landing pages are

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Laurent Gatto
ub.com/ >> Bioconductor/ >> >>>bioconductor.org, with the style sheet at https:// >> github.com/ >> >>>Bioconductor/bioconductor.org/blob/master/assets/style/ >> >>>bioconductor.css. The package landing pages are >&

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Laurent Gatto
he reason that there > > isn't > > >>> more current confusion is because the online pdf > > versions are > > >>> not as useful as the off-line help system. > > >>> > > >>> I think Lauren

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Robert M. Flight
as useful as the off-line help system. > > >>> > > >>>I think Laurent was interested in an integration of help > > pages > > >>>across packages (which is the appeal of > > rdocumentation.org?), > >

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Laurent Gatto
han > pdf? An > > >>>integration of help pages would definitely be a big > job with > > >>> substantial development and maintenance; we will not > be > > >>>undertaking this ourselves. > > >>>

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Laurent Gatto
>>>for the the manual, it's not impossible that we could > find the > >>>resources to do this in the next 6 months. > >>> > >>>One intermediate and helpful step for those willing to > help > >>>

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Kasper Daniel Hansen
would definitely be a big job with > > >>>substantial development and maintenance; we will not be > > >>>undertaking this ourselves. > > >>> > > >>>For the more limited case of adding a (directory of) html > f

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Robert M. Flight
gt;> would be to develop the code to process help pages into a style > >>>consistent with the bioconductor web site. One place where this > >>>could be implemented would be the BiocStyle package (https:// > >>>github.com/Biocon

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Sean Davis
Bioconductor/BiocStyle that would be more convenient...). >>>Perhaps this really means only developing a css style sheet and >>>R's tools::Rd2HTML() (I'm very reluctant to introduce >>>dependencies into the build system, and am ve

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Laurent Gatto
d system, and am very conservative >> about inclusion of fancy features in the html -- these become >> significant maintenance burdens moving forward). >> >> The web site is generated by https://github.com/Bioconductor/ >> bioconductor.org, with the style sheet at h

Re: [Bioc-devel] Package reference manuals in html

2016-12-23 Thread Laurent Gatto
> overall bioc page. > > The implementation suggestions above are just a sketch and > could be quite misguided. If there's interest then probably we > should set up a hangout to discuss in a little more detail. > > Martin > >

Re: [Bioc-devel] Package reference manuals in html

2016-03-19 Thread Andrzej Oleś
ckage_detail.html. The idea would be to end up with >> layouts/_bioc_man_index.html and _bioc_man_body.html that wrapped output >> from BiocStyle in the overall bioc page. >> >> The implementation suggestions above are just a sketch and could be quite >> misguided. If there's interest then probably we should s

Re: [Bioc-devel] Package reference manuals in html

2016-03-19 Thread Wolfgang Huber
u can use the staticdocs package, which does the same basic thing but > prettier (see ggplot2's docs: http://docs.ggplot2.org/current/ > <http://docs.ggplot2.org/current/>) > > The nuclear option, of course, is to do what CRAN does and rebuild R on (one > of) the servers u

Re: [Bioc-devel] Package reference manuals in html

2016-03-08 Thread Andrzej Oleś
mplementation suggestions above are just a sketch and could be quite > misguided. If there's interest then probably we should set up a hangout to > discuss in a little more detail. > > Martin > > ____________ > From: Bioc-devel on behalf of H

Re: [Bioc-devel] Package reference manuals in html

2016-03-04 Thread Hartley, Stephen (NIH/NHGRI) [F]
---Original Message- From: Morgan, Martin [mailto:martin.mor...@roswellpark.org] Sent: Friday, March 04, 2016 8:20 AM To: Hartley, Stephen (NIH/NHGRI) [F]; Laurent Gatto; bioc-devel Subject: Re: [Bioc-devel] Package reference manuals in html One thing about accessing the html versions locally (e.

Re: [Bioc-devel] Package reference manuals in html

2016-03-04 Thread Andrzej Oleś
discuss in a little more detail. > > Martin > > ________ > From: Bioc-devel on behalf of Hartley, > Stephen (NIH/NHGRI) [F] > Sent: Wednesday, March 2, 2016 11:46 AM > To: Laurent Gatto; bioc-devel > Subject: Re: [Bioc-devel] Packag

Re: [Bioc-devel] Package reference manuals in html

2016-03-04 Thread Morgan, Martin
half of Hartley, Stephen (NIH/NHGRI) [F] Sent: Wednesday, March 2, 2016 11:46 AM To: Laurent Gatto; bioc-devel Subject: Re: [Bioc-devel] Package reference manuals in html I'd like to second this. Currently Bioconductor hosts the pdf reference manuals, but those are often sub-ideal. The page br

Re: [Bioc-devel] Package reference manuals in html

2016-03-02 Thread Hartley, Stephen (NIH/NHGRI) [F]
Original Message- From: Laurent Gatto [mailto:lg...@cam.ac.uk] Sent: Tuesday, March 01, 2016 6:42 AM To: bioc-devel Subject: [Bioc-devel] Package reference manuals in html Dear all, I find the http://www.rdocumentation.org/ site very useful to refer to nicely formatted online man pages ind

[Bioc-devel] Package reference manuals in html

2016-03-01 Thread Laurent Gatto
Dear all, I find the http://www.rdocumentation.org/ site very useful to refer to nicely formatted online man pages individually. Unfortunately, this resource is terribly outdated and not maintained anymore. I was wondering if Bioconductor had any interest in serving an html version of individual