Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-10 Thread Tim Triche, Jr.
; > From: "Laurent Gautier" > > To: "Martin Morgan" > > Cc: bioc-devel@r-project.org, "Dan Tenenbaum" > > Sent: Monday, November 10, 2014 9:57:00 AM > > Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for > continuous inte

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-10 Thread Dan Tenenbaum
- Original Message - > From: "Laurent Gautier" > To: "Martin Morgan" > Cc: bioc-devel@r-project.org, "Dan Tenenbaum" > Sent: Monday, November 10, 2014 9:57:00 AM > Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for > co

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-10 Thread Laurent Gautier
org >>> Sent: Sunday, November 9, 2014 8:26:48 AM >>> Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for >>> continuous integration) >>> >>> On 11/09/2014 07:23 AM, Laurent Gautier wrote: >>> >>>> Hi, >>>> &

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-10 Thread Vincent Carey
>>> Sent: Sunday, November 9, 2014 8:26:48 AM >>> Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for >>> continuous integration) >>> >>> On 11/09/2014 07:23 AM, Laurent Gautier wrote: >>> >>>> Hi, >>>> >&

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-10 Thread Martin Morgan
On 11/09/2014 11:06 AM, Dan Tenenbaum wrote: - Original Message - From: "Martin Morgan" To: "Laurent Gautier" , bioc-devel@r-project.org Sent: Sunday, November 9, 2014 8:26:48 AM Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for continuous in

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-10 Thread Laurent Gautier
On Nov 9, 2014 8:06 PM, "Dan Tenenbaum" wrote: > > > > - Original Message - > > From: "Martin Morgan" > > To: "Laurent Gautier" , bioc-devel@r-project.org > > Sent: Sunday, November 9, 2014 8:26:48 AM > > Subject: Re:

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-09 Thread Dan Tenenbaum
- Original Message - > From: "Martin Morgan" > To: "Laurent Gautier" , bioc-devel@r-project.org > Sent: Sunday, November 9, 2014 8:26:48 AM > Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for > continuous integration) > > On 1

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-09 Thread Martin Morgan
On 11/09/2014 07:23 AM, Laurent Gautier wrote: Hi, Continuous integration is a convenient way to automate some of the steps necessary to ensure quality software. Popular ways to do it create a vanilla virtual machine 9VM) with a Linux distribution, and scripts prepares the VM with 3rd-party dep

Re: [Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-09 Thread Tim Triche, Jr.
Yes. The same sort of thing happens when I send code to others. The library dependencies often take longer to install than the code takes to run, and these are not trivial analyses (thousands of cases across dozens of studies with millions to billions of data points). The idea of a PPA in a VM

[Bioc-devel] PPA with built bioconductor packages (for continuous integration)

2014-11-09 Thread Laurent Gautier
Hi, Continuous integration is a convenient way to automate some of the steps necessary to ensure quality software. Popular ways to do it create a vanilla virtual machine 9VM) with a Linux distribution, and scripts prepares the VM with 3rd-party dependencies required by the software. For example,