Re: [Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-11 Thread Steve Lianoglou
Aha! On Fri, Mar 6, 2015 at 4:16 PM, Leonardo Collado Torres wrote: > Welcome Jim! I'm a fan of your knitrBootstrap I knew I recognized the name from somewhere, but wasn't able to recall until now. Welcome to Bioc! -steve -- Steve Lianoglou Computational Biologist Genentech

Re: [Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-06 Thread Leonardo Collado Torres
Welcome Jim! I'm a fan of your knitrBootstrap https://github.com/jimhester/knitrBootstrap and rex https://github.com/kevinushey/rex packages! Plus gmailR https://github.com/jimhester/gmailr I look forward to your future work at BioC! Cheers, Leo On Fri, Mar 6, 2015 at 3:11 PM, Jim Hester wrote:

Re: [Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-06 Thread Jim Hester
I realized I sent this response the first time from the wrong email, so I don't believe it made it to the mailing list. Apologies if you receive this twice. In regards to using covr with RUnit tests, covr is not dependent on using any particular testing framework it simply runs any commands found

Re: [Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-05 Thread Vincent Carey
I second the welcomings. And I am quite interested in covr, but I wonder what we have to do to get it to work with the RUnit-based conventions that we've followed so far, with [basefolder]/tests and [basefolder]/inst/unitTests? On Wed, Mar 4, 2015 at 6:03 PM, Henrik Bengtsson wrote: > On Wed, M

Re: [Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-04 Thread Henrik Bengtsson
On Wed, Mar 4, 2015 at 2:29 PM, Michael Lawrence wrote: > Welcome. > > For those who don't know, Jim is also the author of the neat "lintr" > package, which checks your R code as you type, across multiple editors. > > https://github.com/jimhester/lintr Not to mention https://github.com/jimhester/

Re: [Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-04 Thread Michael Lawrence
Welcome. For those who don't know, Jim is also the author of the neat "lintr" package, which checks your R code as you type, across multiple editors. https://github.com/jimhester/lintr Michael On Wed, Mar 4, 2015 at 2:20 PM, Martin Morgan wrote: > Let me take this belated opportunity to intro

[Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-04 Thread Martin Morgan
Let me take this belated opportunity to introduce Jim Hester to the Bioconductor developer community. Jim is working in the short term on SummarizedExperiment, including the refactoring efforts he introduced yesterday as well as coercion methods to and from ExpressionSet (an initial version f