Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21

2025-04-04 Thread Kern, Lori via Bioc-devel
ay, March 29, 2025 4:05 AM To: Kern, Lori Cc: bioc-devel Subject: Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 Hi Lori, There is some documentation<https://secure-web.cisco.com/1CaaN3K9FoTk2Yod51sOa073f3kslapZhz7-LVKYRBmE93Yq1qBXI4SRYWldRJEjARLQR

Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21

2025-04-02 Thread Lluís Revilla
would like it to be) > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Lluís Revil

Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21

2025-04-02 Thread Kern, Lori via Bioc-devel
rn, Lori Cc: bioc-devel Subject: Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 Hi Lori, There is no need to flush libraries or reinstall R versions to check packages available on repositories. Comparing available packages with dependencies of current (or devel) Bioconductor depe

Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21

2025-04-01 Thread Lluís Revilla
-- > *From:* Lluís Revilla > *Sent:* Saturday, March 29, 2025 4:05 AM > *To:* Kern, Lori > *Cc:* bioc-devel > *Subject:* Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 > > Hi Lori, > > There is some documentation >

Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21

2025-03-29 Thread Lluís Revilla
Hi Lori, There is some documentation about how to keep a package on Bioconductor (and when they are archived). Among other conditions it mentions that they shouldn't be failing ch

[Bioc-devel] List of Deprecated Packages for Bioc3.21

2025-03-27 Thread Kern, Lori via Bioc-devel
The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. This is the current list of deprecated packages for Bioc 3.21. It should be noted, we did try to reach out to these package mainta