Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread James Collins
Thanks Valerie --- this makes complete sense, but I did not think about it. Might be good to post to the new package development FAQ if not there already. > On Jan 26, 2017, at 5:20 PM, Obenchain, Valerie > wrote: > > It's good practice to bump the version as part of > your final commit. When

Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread Obenchain, Valerie
This should have said 2:15pm PST deadline, not 2:25pm. > Looking at the svn logs for LOBSTAHS in devel, there were quite a few > commits on Jan 25. About 1/3 were before the 2:25pm deadline. These were > probably the commits that straddled the deadline: This email message may contain legally pri

Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread Obenchain, Valerie
Hi, Just to clarify, we do have daily software builds that start at 2:15pm PST. We did not have a devel build report this week on Tuesday, Jan 24 due to a problem with the postrun script. AFAIK that is the only day this week we haven't had a full build report. Looking at the svn logs for LOBSTAHS

Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread Kasper Daniel Hansen
Traditionally we have had daily builds, which then takes more than 12h to complete. Recently, the daily build schedule has been more intermitten - I don't know for sure but I thought we were back to daily builds. Still, there can be a big delay due to build time and start, like up to 36h. But it

Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread James Collins
Thanks, Kasper. On your second point: Yes, several recent updates. The bump to v1.1.2 was two days ago, so I figured that would have been reflected in a newer build already. I will give it a few more days. Jamie > On Jan 26, 2017, at 11:57 AM, Kasper Daniel Hansen > wrote: > > It happens in

Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread Kasper Daniel Hansen
It happens in devel that your dependencies fail and then your package fails. Right now XCMS fails in devel because mzR fails. That will presumably be sorted out. The latest build report http://bioconductor.org/checkResults/3.5/bioc-LATEST/LOBSTAHS/ is 1.1.1. Did you do a couple of updates ver

[Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread James Collins
Hi all: Two questions regarding the LOBSTAHS package: 1. Dev build seems to be failing (“error”) on toluca2 after I pushed some updates from our git repository to Bioc svn. Error is: * installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’ ERROR: dependencies ‘xc