Awesome, thanks!
On Tue, May 31, 2016 at 4:11 PM, Michael Lawrence
wrote:
> Sure, done.
>
> On Tue, May 31, 2016 at 11:18 AM, Leonardo Collado Torres
> wrote:
>> Hi Michael,
>>
>> Thanks!
>>
>> Actually, it looks like there are a few more quick changes I need you
>> to do. Simply at
>> https://g
Sure, done.
On Tue, May 31, 2016 at 11:18 AM, Leonardo Collado Torres
wrote:
> Hi Michael,
>
> Thanks!
>
> Actually, it looks like there are a few more quick changes I need you
> to do. Simply at
> https://github.com/Bioconductor-mirror/rtracklayer/blob/917973eb7e9f16bbcd6f6e4b9452f9e40d9a1e94/R/
Hi Michael,
Thanks!
Actually, it looks like there are a few more quick changes I need you
to do. Simply at
https://github.com/Bioconductor-mirror/rtracklayer/blob/917973eb7e9f16bbcd6f6e4b9452f9e40d9a1e94/R/bigWig.R
replace path.expand() with expandPath(). I'm not sure this applies to
all current
Thanks for pointing out that buglet. Fixed.
On Tue, May 31, 2016 at 10:55 AM, Leonardo Collado Torres
wrote:
> Hi Michael,
>
> We tried getting things to work with Amazon Cloud Drive (see Abhi's
> efforts at https://github.com/nellore/duffel/commits/master). But we
> now have the data hosted else
Hi Michael,
We tried getting things to work with Amazon Cloud Drive (see Abhi's
efforts at https://github.com/nellore/duffel/commits/master). But we
now have the data hosted elsewhere where the links work properly.
I just noted a small mistake on rtracklayer:::expandPath(). See:
> startsWith('ht
I checked in something that tries to find openssl automatically on the Mac.
It looks like AWS is for some reason returning 404 for the HEAD command
that the UCSC library uses the get info about the file like the content
size. Same thing happens when I play around in Firefox's developer tools.
The
Hi Michael,
I forgot about pkg-util (just did a fresh BioC 3.3 install). I assumed
the OS X binary would work out of the box.
Anyhow, I installed rtracklayer (release) manually and got another
error (slightly different message now).
$ svn co
https://hedgehog.fhcrc.org/bioconductor/branches/R
The URL redirection is something I can try to add. For the other error, you
need to get openssl installed and made visible to pkg-config, so that
rtracklayer finds it during its build process.
Michael
On Thu, May 5, 2016 at 2:01 PM, Leonardo Collado Torres
wrote:
> Hi Michael,
>
> I have a use
Hi Michael,
I have a use case that is similar to
https://support.bioconductor.org/p/81267/#82142 and looks to me like
it might need some changes in rtracklayer to work. That's why I'm
posting it here this time.
Basically, I'm trying to use rtracklayer to import a bigwig file over
the web which is
