Dear Herve,
Your solution worked out, no 'R CMD check' warning.
--
Tomasz
On Thu, 14 Sep 2017 18:09:44 +0200,
wrote:
Hi Tomasz,
The name of the BSgenome object defined in a BSgenome data package
is the name of the package itself. Hsapiens is just an convenient
"alias" for the long name. S
Hi Tomasz,
The name of the BSgenome object defined in a BSgenome data package
is the name of the package itself. Hsapiens is just an convenient
"alias" for the long name. So you could do:
importFrom(BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19)
importFrom(BSgenome.Hsapiens.UCSC.hg38,
I think the point is that CMD check will issue a warning for the symbol
collision implied by the import statements. I don't know that there is a
way to do this. I think the namespace should be made to avoid conflicts
and if a given name can have distinct values you will have to use code to
sort t
Hello Tomaszu,
On 9/14/17 2:14 PM, Tomasz Stokowy wrote:
Could you suggest how to avoid this warning? I would like to use both hg19 and
hg38 references in my package.
super easy:
library(BSgenome.Hsapiens.UCSC.hg19)
suppressMessages(library(BSgenome.Hsapiens.UCSC.hg38))
_
Dear bioc-devel,
I would like to import Hsapiens objects from both
BSgenome.Hsapiens.UCSC.hg19
and
BSgenome.Hsapiens.UCSC.hg38
this is currently handled in the namespace of my package by
import(BSgenome.Hsapiens.UCSC.hg19)
import(BSgenome.Hsapiens.UCSC.hg38)
I get warning (because I assign two
