Re: [Bioc-devel] GLX extension missing on petty

2013-04-06 Thread Dan Tenenbaum
On Sat, Apr 6, 2013 at 11:32 AM, Dan Tenenbaum wrote: > On Sat, Apr 6, 2013 at 10:39 AM, Jiří Hon wrote: >> Dne Fri, 05 Apr 2013 19:07:12 +0200 Dan Tenenbaum >> napsal(a): >> >> >>> On Fri, Apr 5, 2013 at 2:11 AM, Jiří Hon >>> wrote: > > In the short term, you can disable all vignette c

Re: [Bioc-devel] GLX extension missing on petty

2013-04-06 Thread Dan Tenenbaum
On Sat, Apr 6, 2013 at 10:39 AM, Jiří Hon wrote: > Dne Fri, 05 Apr 2013 19:07:12 +0200 Dan Tenenbaum > napsal(a): > > >> On Fri, Apr 5, 2013 at 2:11 AM, Jiří Hon >> wrote: In the short term, you can disable all vignette code chunks that use rgl (with eval=FALSE), and do the same w

Re: [Bioc-devel] GLX extension missing on petty

2013-04-06 Thread Jiří Hon
Dne Fri, 05 Apr 2013 19:07:12 +0200 Dan Tenenbaum napsal(a): On Fri, Apr 5, 2013 at 2:11 AM, Jiří Hon wrote: In the short term, you can disable all vignette code chunks that use rgl (with eval=FALSE), and do the same with examples that use rgl (with \dontrun{}). Thank you a lot for trac

Re: [Bioc-devel] GLX extension missing on petty

2013-04-05 Thread Dan Tenenbaum
On Fri, Apr 5, 2013 at 2:11 AM, Jiří Hon wrote: >> In the short term, you can disable all vignette code chunks that use >> rgl (with eval=FALSE), and do the same with examples that use rgl >> (with \dontrun{}). > > > Thank you a lot for tracking that down. Unfortunately all vignette code > chunks

Re: [Bioc-devel] GLX extension missing on petty

2013-04-05 Thread Jiří Hon
In the short term, you can disable all vignette code chunks that use rgl (with eval=FALSE), and do the same with examples that use rgl (with \dontrun{}). Thank you a lot for tracking that down. Unfortunately all vignette code chunks that use rgl have been always disabled with eval=FALSE. That

Re: [Bioc-devel] GLX extension missing on petty

2013-04-04 Thread Dan Tenenbaum
On Thu, Apr 4, 2013 at 4:22 PM, Dan Tenenbaum wrote: > On Wed, Apr 3, 2013 at 9:45 AM, Dan Tenenbaum wrote: >> Hi Jirka, >> >> >> On Wed, Apr 3, 2013 at 9:06 AM, Jiří Hon wrote: >>> Hi, >>> the latest bioc build of my new package 'triplex' on petty ended with this >>> error message: >>> >>> Warn

Re: [Bioc-devel] GLX extension missing on petty

2013-04-04 Thread Dan Tenenbaum
On Wed, Apr 3, 2013 at 9:45 AM, Dan Tenenbaum wrote: > Hi Jirka, > > > On Wed, Apr 3, 2013 at 9:06 AM, Jiří Hon wrote: >> Hi, >> the latest bioc build of my new package 'triplex' on petty ended with this >> error message: >> >> Warning in rgl.init(initValue) : RGL: GLX extension missing on server

Re: [Bioc-devel] GLX extension missing on petty

2013-04-03 Thread Jiří Hon
This is a build system problem, and I am looking into it. The build system runs under Xvfb, but I have no problem building your package when logged into the console of petty. Thank you a lot for your immediate reaction and please let me know if I could help with anything. Jirka Dne Wed, 03

Re: [Bioc-devel] GLX extension missing on petty

2013-04-03 Thread Dan Tenenbaum
Hi Jirka, On Wed, Apr 3, 2013 at 9:06 AM, Jiří Hon wrote: > Hi, > the latest bioc build of my new package 'triplex' on petty ended with this > error message: > > Warning in rgl.init(initValue) : RGL: GLX extension missing on server > Warning in fun(libname, pkgname) : error in rgl_init > > For f

[Bioc-devel] GLX extension missing on petty

2013-04-03 Thread Jiří Hon
Hi, the latest bioc build of my new package 'triplex' on petty ended with this error message: Warning in rgl.init(initValue) : RGL: GLX extension missing on server Warning in fun(libname, pkgname) : error in rgl_init For full report see http://bioconductor.org/checkResults/devel/bioc-LATEST