Re: [Bioc-devel] GEOquery Warnings When Reading SOFT File

2015-02-19 Thread James W. MacDonald
Hi Dario, This isn't the right forum for your question (this listserv is for development of packages, not questions about existing packages), so you should ask on the support site. Best, Jim On Thu, Feb 19, 2015 at 1:00 AM, Dario Strbenac wrote: > library(GEOquery) > gastricChina <- getGEO(

[Bioc-devel] GEOquery Warnings When Reading SOFT File

2015-02-18 Thread Dario Strbenac
library(GEOquery) gastricChina <- getGEO("GSE65801", GSEMatrix = FALSE) Generates warnings > head(warnings(), 1) Warning message: In readLines(con, n = chunksize) : seek on a gzfile connection returned an internal error Does it affect the correctness of the imported data ? Also, experimentDat