Re: [Bioc-devel] Error with compiling Rhtslib

2019-10-17 Thread Martin Morgan
You're using R-devel, whereas Bioconductor is using R-3.6.x for both our release and devel branches. Consequently, you're being required to compile from source, rather than using the pre-built binaries. For this reason, your system needs to have the necessary libraries and their headers; this wi

Re: [Bioc-devel] Error with compiling Rhtslib

2019-10-17 Thread James W. MacDonald
This isn't a bioc-devel question. This listserv is intended for people with package development questions, not general problems, which should be asked on the support site. And when I Google 'lzma.h' (which you could do as well), one of the answers is https://stackoverflow.com/questions/22738077/ba

[Bioc-devel] Error with compiling Rhtslib

2019-10-17 Thread Yuelin Zhu
Hi, It looks like Rhtslib can not be compiled for R_devel and the main error message says: cram/cram_io.c:61:10: fatal error: 'lzma.h' file not found Please see details below: > BiocManager::install("Rhtslib") Bioconductor version 3.10 (BiocManager 1.30.8), R Under development (unstable) (2019