On 07/23/2014 09:59 PM, Leonardo Collado Torres wrote:
On Thu, Jul 24, 2014 at 12:17 AM, Martin Morgan wrote:
On 07/23/2014 06:41 PM, Leonardo Collado Torres wrote:
Finally, regarding the issue of pushing new features to devel versions
(and not release), I understand the reasons for doing so.
- Original Message -
> From: "Leonardo Collado Torres"
> To: bioc-devel@r-project.org
> Sent: Wednesday, July 23, 2014 6:41:06 PM
> Subject: Re: [Bioc-devel] Distinction between release and devel package
> websites
>
> > Date: Wed, 23 Jul 20
>>>> Andrzej
>>>>>>
>>>>>> On Tue, Jul 22, 2014 at 6:26 PM, James W. MacDonald
>>>>>> wrote:
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Given that we have an
ulian Gehring"
To: "Hervé Pagès" , "Michael Lawrence"
, "Vincent Carey"
Cc: bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [Bioc-devel] Distinction between release and devel
package
websites
Hi,
Tooltips that appear while hovering o
Lite().
>>>>>
>>>>> Best,
>>>>>
>>>>> Jim
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On 7/22/2014 11:48 AM, Dan Tenenbaum wrote:
>>>>>>
>>>>>>
On Thu, Jul 24, 2014 at 12:17 AM, Martin Morgan wrote:
> On 07/23/2014 06:41 PM, Leonardo Collado Torres wrote:
>>
>> Finally, regarding the issue of pushing new features to devel versions
>> (and not release), I understand the reasons for doing so. In my case,
>> what I have been trying to do to
On 07/23/2014 06:41 PM, Leonardo Collado Torres wrote:
Finally, regarding the issue of pushing new features to devel versions
(and not release), I understand the reasons for doing so. In my case,
what I have been trying to do to minimize major differences between
the versions is to keep working o
> Date: Wed, 23 Jul 2014 11:33:44 -0700
> From: Martin Morgan
> To: Matthew McCall , Michael Lawrence
>
> Cc: "bioc-devel@r-project.org"
> Subject: Re: [Bioc-devel] Distinction between release and devel
> package websites
> Message-ID: <53d00
bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [Bioc-devel] Distinction between release and devel package
websites
Hi,
Tooltips that appear while hovering over selected links are easy to
miss. This alone will likely not be clear enough. We should convey
the
infor
until after BioC2014.
Dan
- Original Message -
From: "Julian Gehring"
To: "Hervé Pagès" , "Michael Lawrence" <
lawrence.mich...@gene.com>, "Vincent Carey"
Cc: bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [
ng"
To: "Hervé Pagès" , "Michael Lawrence" <
lawrence.mich...@gene.com>, "Vincent Carey"
Cc: bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [Bioc-devel] Distinction between release and devel
package
websites
Hi,
Tooltips
On 07/22/2014 06:17 PM, Vincent Carey wrote:
On Tue, Jul 22, 2014 at 7:10 PM, Andrzej OleÅ›
wrote:
Hi Dan, Michael, Julian,
Thank's for keeping the links to the tarballs!
I don't argue that mixing release and devel is a good idea in general.
Rather, that for some users this might be the best
On Tue, Jul 22, 2014 at 7:10 PM, Andrzej OleÅ
wrote:
> Hi Dan, Michael, Julian,
>
> Thank's for keeping the links to the tarballs!
>
> I don't argue that mixing release and devel is a good idea in general.
> Rather, that for some users this might be the best compromise between
> the following tw
Hi Dan, Michael, Julian,
Thank's for keeping the links to the tarballs!
I don't argue that mixing release and devel is a good idea in general.
Rather, that for some users this might be the best compromise between
the following two objectives:
1. a stable working environment
2. the possibility to
Hi Martin,
thank you!
On Tue, Jul 22, 2014 at 9:01 PM, Martin Morgan wrote:
> We might tell google not to index devel packages (but then packages added
> during a particular release cycle aren't indexed until the next release).
This adds to the complexity and I'm not sure how hard this would be
look
>>>> more
>>>> different from each other, but I think something needs to be done about
>>>> the
>>>> second problem as well. Perhaps a popup that comes up when you click on
>>>> a
>>>> package tarball saying "The best
Hi Andzrej,
thank you, I see your point but I'm afraid I must disagree with you.
I've had this situation numerous times that I have added/fixed
something in the devel branch of a package and had to advice the users
to use this latest version. Needless to say, they were typically using
the release b
Best,
> Andrzej
>
> On Tue, Jul 22, 2014 at 7:57 PM, Dan Tenenbaum wrote:
> >
> >
> > - Original Message -
> >> From: "James W. MacDonald"
> >> To: "Andrzej OleÅ"
> >> Cc: "Dan Tenenbaum" , "Juli
>
> Best,
> Andrzej
>
> On Tue, Jul 22, 2014 at 7:57 PM, Dan Tenenbaum wrote:
> >
> >
> > - Original Message -
> >> From: "James W. MacDonald"
> >> To: "Andrzej OleÅ"
> >> Cc: "Dan Tenenbaum" , &q
n
> Best,
> Andrzej
>
> On Tue, Jul 22, 2014 at 7:57 PM, Dan Tenenbaum
> wrote:
> >
> >
> > ----- Original Message -----
> >> From: "James W. MacDonald"
> >> To: "Andrzej Oleś"
> >> Cc: "Dan Tenenbaum" , &quo
Cc: "Dan Tenenbaum" , "Julian Gehring"
>> , "Michael Lawrence"
>> , bioc-devel@r-project.org
>> Sent: Tuesday, July 22, 2014 10:51:35 AM
>> Subject: Re: [Bioc-devel] Distinction between release and devel package
>> websites
>>
>>
do probably won't happen until after BioC2014.
Dan
- Original Message -
From: "Julian Gehring"
To: "Hervé Pagès" , "Michael Lawrence"
, "Vincent Carey"
Cc: bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [Bioc-deve
l Lawrence" <
lawrence.mich...@gene.com>, "Vincent Carey"
Cc: bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [Bioc-devel] Distinction between release and devel
package
websites
Hi,
Tooltips that appear while hovering over selected links are eas
Cc: "Dan Tenenbaum" , "Julian Gehring" ,
"Michael Lawrence"
, bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 10:14:05 AM
Subject: Re: [Bioc-devel] Distinction between release and devel package websites
Hi all,
I think having links is useful, e.g. for someone wh
>>> >> second problem as well. Perhaps a popup that comes up when you click
>>> on a
>>> >> package tarball saying "The best way to install this is with
>>> biocLite();
>>> >> are you sure you want to download it?"
>&g
; biocLite();
>> >> are you sure you want to download it?"
>> >>
>> >> Whatever we do probably won't happen until after BioC2014.
>> >>
>> >> Dan
>> >>
>> >>
>> >> - Original Message -
>&g
> >>> and
> >>> installing from the package pages when they should be using
> >>> biocLite().
> >>>
> >>> I am open to the suggestions for making the release/devel pages
> >>> look more
> >>> different from each
- Original Message -
> From: "Matthew McCall"
> To: "Michael Lawrence"
> Cc: bioc-devel@r-project.org
> Sent: Tuesday, July 22, 2014 10:49:39 AM
> Subject: Re: [Bioc-devel] Distinction between release and devel package
> websites
>
>
--- Original Message -
From: "Julian Gehring"
To: "Hervé Pagès" , "Michael Lawrence"
, "Vincent Carey"
Cc: bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [Bioc-devel] Distinction between release and devel package
websites
; Dan
> >>
> >>
> >> - Original Message -
> >>
> >>> From: "Julian Gehring"
> >>> To: "Hervé Pagès" , "Michael Lawrence" <
> >>> lawrence.mich...@gene.com>, "Vincent Carey"
>
t; >> second problem as well. Perhaps a popup that comes up when you
> >> click on a
> >> package tarball saying "The best way to install this is with
> >> biocLite(); are
> >> you sure you want to download it?"
> >>
> >> Wha
Original Message -
>>
>>> From: "Julian Gehring"
>>> To: "Hervé Pagès" , "Michael Lawrence" <
>>> lawrence.mich...@gene.com>, "Vincent Carey"
>>>
>>> Cc: bioc-devel@r-project.org
>>&g
>>
>> - Original Message -----
>>>
>>> From: "Julian Gehring"
>>> To: "Hervé Pagès" , "Michael Lawrence"
>>> , "Vincent Carey"
>>>
>>> Cc: bioc-devel@r-project.org
>>> Sent: Tues
On Tue, Jul 22, 2014 at 12:50 AM, Hervé Pagès wrote:
> Hi,
>
> In addition to these suggestions, how about using a special background
> color for package landing pages in devel?
>
>
it makes sense to do this too.
> Cheers,
> H.
>
>
> On 07/21/2014 07:32 PM, Michael Lawrence wrote:
>
>> Or an
- Original Message -
> From: "James W. MacDonald"
> To: "Dan Tenenbaum" , "Julian Gehring"
>
> Cc: "Michael Lawrence" , bioc-devel@r-project.org
> Sent: Tuesday, July 22, 2014 9:26:13 AM
> Subject: Re: [Bioc-devel] Distinctio
t; , "Michael Lawrence" ,
"Vincent Carey"
Cc: bioc-devel@r-project.org
Sent: Tuesday, July 22, 2014 8:07:29 AM
Subject: Re: [Bioc-devel] Distinction between release and devel package websites
Hi,
Tooltips that appear while hovering over selected links are easy to
miss. This a
n't happen until after BioC2014.
Dan
- Original Message -
> From: "Julian Gehring"
> To: "Hervé Pagès" , "Michael Lawrence"
> , "Vincent Carey"
>
> Cc: bioc-devel@r-project.org
> Sent: Tuesday, July 22, 2014 8:07:29 AM
Hi,
Tooltips that appear while hovering over selected links are easy to
miss. This alone will likely not be clear enough. We should convey the
information that the entire website presents a different version of the
package.
The idea of a notification box that can be made visible by the
in
Hi,
In addition to these suggestions, how about using a special background
color for package landing pages in devel?
Cheers,
H.
On 07/21/2014 07:32 PM, Michael Lawrence wrote:
Or an unobtrusive "notification box" that drops down from the top of the
page, saying something like "this is devel";
Or an unobtrusive "notification box" that drops down from the top of the
page, saying something like "this is devel"; there would be a dismiss
button and a checkbox for whether to show again. The user is free to simply
ignore it and proceed as normal.
On Mon, Jul 21, 2014 at 7:10 PM, Vincent Ca
how about a tooltip that reads "installation via biocLite() is the
recommended approach to Bioconductor software
acquisition, other approaches may lead to inconsistent package-sets" that
appears when a reader hovers over a tarball. i would imagine that this is
how the "wrong package" gets installe
Hi,
Can we make the package websites for the devel and release version of a
package more distinguishable?
To elaborate on this: In the past, I have seen several users having
problems with using bioconductor because they ended up on the wrong page
(mostly the devel page when they would have n
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