Re: [Bioc-devel] DeMixT issue

2020-02-05 Thread Shepherd, Lori
om: Bioc-devel on behalf of p...@rice.edu Sent: Wednesday, February 5, 2020 1:04 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] DeMixT issue Hi Bioconductor team, I just pushed DeMixT package from 1.3.3 to 1.3.4 into level branch and 1.2.3 to 1.2.4 into release branch since I found a

[Bioc-devel] DeMixT issue

2020-02-04 Thread py11
Hi Bioconductor team, I just pushed DeMixT package from 1.3.3 to 1.3.4 into level branch and 1.2.3 to 1.2.4 into release branch since I found a bug in the package. Since I am very new to git, may I know how can I verify the change of log? Besides, is there anyway that I can notice the change to

Re: [Bioc-devel] DeMixT issue

2020-01-24 Thread Martin Morgan
s > > Buffalo, New York 14263 > > > From: Bioc-devel on behalf of > Shepherd, Lori > Sent: Tuesday, January 21, 2020 9:06 AM > To: py11 ; Martin Morgan > Cc: bioc-devel@r-project.org > Subject:

Re: [Bioc-devel] DeMixT issue

2020-01-23 Thread py11
on behalf of Shepherd, Lori Sent: Tuesday, January 21, 2020 9:06 AM To: py11 ; Martin Morgan Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] DeMixT issue The current version on devel is 1.3.2 which is what is consistent with what is in g...@git.bioconductor.org:packages/DeMixT.git If

Re: [Bioc-devel] DeMixT issue

2020-01-21 Thread Shepherd, Lori
Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Shepherd, Lori Sent: Tuesday, January 21, 2020 9:06 AM To: py11 ; Martin Morgan Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] DeMixT issue The current version on devel is 1.3

Re: [Bioc-devel] DeMixT issue

2020-01-21 Thread Shepherd, Lori
@​ > > > Package: DeMixT​ > > > Title: Cell type-specific deconvolution of heterogeneous tumor > > > samples with two or three​ > > > components using expression data from RNAseq or > > microarray platforms​

Re: [Bioc-devel] DeMixT issue

2020-01-20 Thread py11
> microarray platforms​ > > -Version: 1.3.0​ > > +Version: 1.4.0​ > > Date: 2020-01-06 > > > > And you have this commit(7fa3d1b4e97a48112634452ac752a9fed8ade493) > > taking it to 1.5.0 and then this one &g

Re: [Bioc-devel] DeMixT issue

2020-01-18 Thread py11
rs to produce > the build report tomorrow. > > We'll get back to you on a path forward. > > Best, > > Nitesh > > > > From: Bioc-devel on behalf of > py11 > Sent: Wed

Re: [Bioc-devel] DeMixT issue

2020-01-15 Thread py11
ghtly builders to produce the build report tomorrow. We'll get back to you on a path forward. Best, Nitesh From: Bioc-devel on behalf of py11 Sent: Wednesday, January 15, 2020 7:46 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] DeMixT i

Re: [Bioc-devel] DeMixT issue

2020-01-15 Thread Turaga, Nitesh
to wait for the nightly builders to produce the build report tomorrow. We'll get back to you on a path forward. Best, Nitesh From: Bioc-devel on behalf of py11 Sent: Wednesday, January 15, 2020 7:46 PM To: bioc-devel@r-project.org Subject: [Bioc-de

[Bioc-devel] DeMixT issue

2020-01-15 Thread py11
Hi Bioconductor team, I just pushed the latest version from 1.3.1 to 1.3.2 into devel branch; however, there is no changes on the DeMixT website in biocondoctor, https://bioconductor.org/packages/devel/bioc/html/DeMixT.html Can you help me update it or is there anything I can do? Thanks, P