Re: [Bioc-devel] Confusion on biocLite() with github and annotation data repo

2016-06-28 Thread James W. MacDonald
ll_github() and thence to > devtools::install(). > > Dan > > > - Original Message - > > From: "Martin Morgan" > > To: "James W. MacDonald" , "Sean Davis" < > sdav...@mail.nih.gov> > > Cc: "bioc-devel" >

Re: [Bioc-devel] Confusion on biocLite() with github and annotation data repo

2016-06-28 Thread Dan Tenenbaum
Cc: "bioc-devel" > Sent: Tuesday, June 28, 2016 8:11:26 AM > Subject: Re: [Bioc-devel] Confusion on biocLite() with github and annotation > data repo > On 06/28/2016 10:56 AM, James W. MacDonald wrote: >> I had a similar experience, where the dependencies were not found up

Re: [Bioc-devel] Confusion on biocLite() with github and annotation data repo

2016-06-28 Thread Martin Morgan
On 06/28/2016 10:56 AM, James W. MacDonald wrote: I had a similar experience, where the dependencies were not found upon installation. I didn't do anything to fix it - instead it seemed that just re-running biocLite after the initial failed install ended up working. Installing from github deleg

Re: [Bioc-devel] Confusion on biocLite() with github and annotation data repo

2016-06-28 Thread James W. MacDonald
I had a similar experience, where the dependencies were not found upon installation. I didn't do anything to fix it - instead it seemed that just re-running biocLite after the initial failed install ended up working. Maybe the same will work for you? Best, Jim On Mon, Jun 27, 2016 at 5:03 PM,