t;>> > opened URL
>>> > ==
>>> > downloaded 13 KB
>>> >
>>> > * installing *source* package ŒBiocInstaller¹ ...
>>> > ** R
>>> > ** inst
>>> > ** prepari
ller)
>> >
>> > The downloaded source packages are in
>> >Œ/private/tmp/Rtmp44wF3Y/downloaded_packages¹
>> > Bioconductor version 3.1 (BiocInstaller 1.17.1), ?biocLite for help
>> > 'BiocInstaller' changed to version 1.17.1
>> >
>> >
&
y R installation into this seemingly
> > locked
> > state, but maybe there should be a force=TRUE option to useDevel
> > for
> > cases
> > like this.
> > Florian
> >
> >
>
I think you somehow had the release version of BiocInstaller
- Original Message -
> From: "Florian Hahne"
> To: "Hervé Pagès" , "Dan Tenenbaum"
> , "Leonardo Collado Torres"
>
> Cc: bioc-devel@r-project.org
> Sent: Wednesday, November 5, 2014 12:48:23 AM
> Subject: Re: [Bioc-devel] Ca
/11/14 20:04, "Hervé Pagès" wrote:
>Hi,
>
>On 11/02/2014 10:58 PM, Dan Tenenbaum wrote:
>>
>>
>> - Original Message -
>>> From: "Leonardo Collado Torres"
>>> To: "Kasper Daniel Hansen"
>>> Cc: bioc-de
Hi,
On 11/02/2014 10:58 PM, Dan Tenenbaum wrote:
- Original Message -
From: "Leonardo Collado Torres"
To: "Kasper Daniel Hansen"
Cc: bioc-devel@r-project.org
Sent: Sunday, November 2, 2014 9:26:25 PM
Subject: Re: [Bioc-devel] Can't seem to use useDevel()
- Original Message -
> From: "Leonardo Collado Torres"
> To: "Kasper Daniel Hansen"
> Cc: bioc-devel@r-project.org
> Sent: Sunday, November 2, 2014 9:26:25 PM
> Subject: Re: [Bioc-devel] Can't seem to use useDevel(); biocLite() for
>
Thanks, I incorrectly thought that I was using the same R version as
the Bioc-build machines since the "r66923" part matched. Now I realize
that this tag is used in all of the newest R builds at
http://r.research.att.com/.
On Sun, Nov 2, 2014 at 9:57 PM, Kasper Daniel Hansen
wrote:
> You should n
You should not be using R-3.1.2 patched with the current devel version of
Bioconductor; use R-devel.
Best,
Kasper
On Sun, Nov 2, 2014 at 9:32 PM, Leonardo Collado Torres
wrote:
> Hi,
>
> I can't seem to install devel packages via biocLite() and I wonder if
> something is broken or if I'm missin
Hi,
I can't seem to install devel packages via biocLite() and I wonder if
something is broken or if I'm missing something. For example, take
GenomeInfoDb which is at 1.3.6 and is passing all checks.
The usual code using a fresh R 3.1.2-patched install isn't working as
it downloads the latest rele
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