I forgot to mention that the BLOSUM and PAM substitution matrices have
also moved from Biostrings to the new pwalign package.
37 software packages were affected by this move (see list below). All of
them have been fixed. If you maintain one of them, please resync your
GitHub repo with the repo
Hi developers,
pairwiseAlignement() and stringDist() have recently moved from
Biostrings to the new pwalign package. This is causing a number of
failures today on the 3.19 report. Since yesterday I've been actively
repairing packages affected by this by pushing fixes to
git.bioconductor.org. M
