Re: [Bioc-devel] Bug in les:::cdfDuplicates

2014-03-25 Thread Ryan Thompson
Thanks! I patched my local copy on my own, so I'll be fine until the next release. On Mar 25, 2014 3:04 AM, "Julian Gehring" wrote: > Hi Ryan, > > Thank you for the detailed bug report and already providing a fix for > this. I have added your patch to 'les_1.13.2' and pushed it to > bioc-devel,

Re: [Bioc-devel] Bug in les:::cdfDuplicates

2014-03-25 Thread Julian Gehring
Hi Ryan, Thank you for the detailed bug report and already providing a fix for this. I have added your patch to 'les_1.13.2' and pushed it to bioc-devel, the updated build should become available soon. I'll do some more tests within the next days, and then also update bioc-release. If you need

[Bioc-devel] Bug in les:::cdfDuplicates

2014-03-24 Thread Ryan C. Thompson
Hello, I have discovered a bug in the cdfDuplicates function in the les package. This function is used indirectly by the GSRI package, and I was attempting to use this package when I encountered an error. The error appears to occur because both rle and table are used to deduplicate a (sorted)