Re: [Bioc-devel] BiocParallel on macosx: socketConnection failures with MulticoreParam

2017-11-22 Thread Vincent Carey
it looks like manager.hostname="127.0.0.1" does the trick. > options(bphost="127.0.0.1") > library(BiocParallel) > register(MulticoreParam(2)) also works. Many thanks. On Wed, Nov 22, 2017 at 1:25 PM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > Does it help to use the argument ma

Re: [Bioc-devel] BiocParallel on macosx: socketConnection failures with MulticoreParam

2017-11-22 Thread Martin Morgan
Does it help to use the argument manager.hostname="localhost" (or indeed the name of your computer) following https://support.bioconductor.org/p/88307/#88874 ? and can you clarify about how you explored using different ports? See also ?SnowParam section 'Global Options' Martin On 11/22/2017

[Bioc-devel] BiocParallel on macosx: socketConnection failures with MulticoreParam

2017-11-22 Thread Vincent Carey
from example(bplapply), after register(MulticoreParam(2, timeout=5)) bplppl> bplapply(1:10, fun) *Error in socketConnection(host, port, TRUE, TRUE, "a+b", timeout = timeout) : * * cannot open the connection* *In addition: Warning message:* *In socketConnection(host, port, TRUE, TRUE, "a+b", t