Re: [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem

2015-10-07 Thread Obenchain, Valerie
> > On 09/05/2015 12:10 AM, Obenchain, Valerie wrote: >> Hi Robert, >> >> Thanks for reporting the bug. The problem was with how 'X' was split >> before dispatching to bplapply() and affected both SerialParam and >> SnowParam. Now fixed in release (1.2.21) and devel (1.3.52).

Re: [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem

2015-10-01 Thread Robert Castelo
0 AM, Obenchain, Valerie wrote: Hi Robert, Thanks for reporting the bug. The problem was with how 'X' was split before dispatching to bplapply() and affected both SerialParam and SnowParam. Now fixed in release (1.2.21) and devel (1.3.52). Valerie - Forwarded Message - From: "

Re: [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem

2015-09-04 Thread Robert Castelo
el (1.3.52). Valerie - Forwarded Message - From: "Robert Castelo" To: bioc-devel@r-project.org Sent: Wednesday, September 2, 2015 8:12:33 AM Subject: [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem hi, I have encountered a problem when using the bpvec

Re: [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem

2015-09-04 Thread Obenchain, Valerie
elo" > To: bioc-devel@r-project.org > Sent: Wednesday, September 2, 2015 8:12:33 AM > Subject: [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem > > hi, > > I have encountered a problem when using the bpvec() function from the > BiocParallel p

[Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem

2015-09-02 Thread Robert Castelo
hi, I have encountered a problem when using the bpvec() function from the BiocParallel package with DNAStringSet objects and the "SerialParam" backend: library(Biostrings) library(BiocParallel) ## all correct when using the multicore backend bpvec(X=DNAStringSet(c("AC", "GT")), FUN=as.char