Re: [Bioc-devel] BiocManager::install() behavior with available updates

2022-11-13 Thread LluĂ­s Revilla
Hi Matej, Usually when I find this kind of message it indicates that the package is installed in different libraries and you are updating in just one library. Have you checked that it is installed in multiple libraries? I usually use something similar to this to identify those packages: ip1 <- i

[Bioc-devel] BiocManager::install() behavior with available updates

2022-11-12 Thread Matej Lexa
Dear all, I encountered strange behavior of BiocManager::install(). When I ask it to install a package that is flagged as one with available updates, it gives me the option to upgrade immediately after I install the latest version. Not a big deal but thought it should not offer that possibili