Re: [Bioc-devel] Bioc releases and Bioconda

2017-02-27 Thread Kasper Daniel Hansen
On Mon, Feb 27, 2017 at 3:54 AM, Elena Grassi wrote: > > Bioconda developers are reasoning on a way to annotate bioc version, this > should fix the issue without any work needed on single packages versions. > You need this; your current approach will not work. You cannot assume that package aut

Re: [Bioc-devel] Bioc releases and Bioconda

2017-02-27 Thread Elena Grassi
On Fri, Feb 24, 2017 at 9:09 PM, Nitesh wrote: > Could you tell me more about which package you are trying to wrap a recipe > for? > Right now my packages: the recipes are working, but the helper skeleton script that create dependencies gets them from DESCRIPTION and if lower limits for version

Re: [Bioc-devel] Bioc releases and Bioconda

2017-02-24 Thread Nitesh
Hi Elena, Could you tell me more about which package you are trying to wrap a recipe for? And could you give me an example for what you mean by " determining dependencies limits when one of the packages that you depend on changes its public interface." ? Best, Nitesh On Fri, 24 Feb 2017 at 10:3

[Bioc-devel] Bioc releases and Bioconda

2017-02-24 Thread Elena Grassi
I am trying to ease Bioconda recipes writers for Bioconductor packages. The issue at hand is determining dependencies limits when one of the packages that you depend on changes its public interface. Up to now I admit that I did not fix my packages deps (adding a pin to a >= version of them) when t