Martin
From: Bioc-devel [bioc-devel-boun...@r-project.org
<mailto:bioc-devel-boun...@r-project.org>] on behalf of Aaron
Lun [a...@wehi.edu.au <mailto:a...@wehi.edu.au>]
Se
05, 2015 12:27 PM
To: bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>
Subject: Re: [Bioc-devel] Base class for interaction data -
expressions of interest
There's a growing number of Bioconductor packages dealing with
rate metadata as appropriate (like
SummarizedExepriment, for instance).
Martin
From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Aaron
Lun [a...@wehi.edu.au]
Sent: Thursday, November 05, 2015 12:27 PM
To: bioc-devel@r-project.org
Subject: Re: [
gt; classes, especially the S4Vectors / GRanges world, and to integrate
>> metadata as appropriate (like SummarizedExepriment, for instance).
>>
>> Martin
>>
>> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Aaron
>> Lun [a...@wehi.edu.au
-project.org] on behalf of Aaron Lun
[a...@wehi.edu.au]
Sent: Thursday, November 05, 2015 12:27 PM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Base class for interaction data - expressions of
interest
There's a growing number of Bioconductor packages dealing with
interaction data;
rate metadata as appropriate (like SummarizedExepriment, for
>> >> instance).
>> >>
>> >> Martin
>> >>
>> >> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of
>> Aaron Lun
>>
g classes, especially the S4Vectors / GRanges world, and to
> >> integrate metadata as appropriate (like SummarizedExepriment, for
> >> instance).
> >>
> >> Martin
> >>
> >> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of A
roject.org] on behalf of Aaron Lun
[a...@wehi.edu.au]
Sent: Thursday, November 05, 2015 12:27 PM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Base class for interaction data - expressions of
interest
There's a growing number of Bioconductor packages dealing with
interaction
>>
>> Martin
>>
>> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Aaron Lun
>> [a...@wehi.edu.au]
>> Sent: Thursday, November 05, 2015 12:27 PM
>> To: bioc-devel@r-project.org
>> Subject: Re
riate (like SummarizedExepriment, for instance).
>
> Martin
>
> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Aaron Lun
> [a...@wehi.edu.au]
> Sent: Thursday, November 05, 2015 12:27 PM
> To: bioc-devel@r-project.org
&
for
> instance).
>
> Martin
>
> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Aaron Lun
> [a...@wehi.edu.au]
> Sent: Thursday, November 05, 2015 12:27 PM
> To: bioc-devel@r-project.org
> Subject: Re: [Bioc-devel] Base clas
rsday, November 05, 2015 12:27 PM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Base class for interaction data - expressions of
interest
There's a growing number of Bioconductor packages dealing with
interaction data; diffHic, GenomicInteractions, HiTC, to name a few (and
probab
There's a growing number of Bioconductor packages dealing with
interaction data; diffHic, GenomicInteractions, HiTC, to name a few (and
probably more in the future). Each of these packages defines its own
class to store interaction data - DIList for diffHic,
GenomicInteractions for GenomicInter
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