Thanks !
Am away from office the following 10 days, but will follow your advice when
back, and hopefully everything will then work as intended.
Jesper
On Thu, Jan 3, 2013 at 7:17 AM, Dan Tenenbaum wrote:
> On Fri, Dec 28, 2012 at 11:31 AM, Dan Tenenbaum
> wrote:
> > On Fri, Dec 28, 2012 at 11
On Fri, Dec 28, 2012 at 11:31 AM, Dan Tenenbaum wrote:
> On Fri, Dec 28, 2012 at 11:01 AM, Jesper Gådin wrote:
>> After some fighting I have now the bleeding edge of R and the bioconductor
>> packages, and my own package was installed without any errors. Perfect!
>>
>> Even if I finally got every
On 12/28/2012 11:01 AM, Jesper Gådin wrote:
After some fighting I have now the bleeding edge of R and the bioconductor
packages, and my own package was installed without any errors. Perfect!
For what it's worth I do
mkdir src/
cd src
svn checkout https://svn.r-project.org/R/trunk/ R-deve
On Fri, Dec 28, 2012 at 12:29 PM, Jesper Gådin wrote:
> Hi Dan,
>
> Actually my $R_HOME is empty. But even if I would set $R_HOME to r-devel
> directory the include/R_ext/ does not contain RConverters.h (only the files
> specified below are present)
>
R_HOME is set by R. So you find out its valu
Hi Dan,
Actually my $R_HOME is empty. But even if I would set $R_HOME to r-devel
directory the include/R_ext/ does not contain RConverters.h (only the files
specified below are present)
/R_ext$ ls
Applic.h
Arith.h
BLAS.h
Boolean.h
Callbacks.h
Complex.h
Constants.h
Error.h
GetX11Image.h
GraphicsDe
On Fri, Dec 28, 2012 at 11:01 AM, Jesper Gådin wrote:
> After some fighting I have now the bleeding edge of R and the bioconductor
> packages, and my own package was installed without any errors. Perfect!
>
> Even if I finally got everything to work I get this error worth mentioning:
>
>>biocLite(
After some fighting I have now the bleeding edge of R and the bioconductor
packages, and my own package was installed without any errors. Perfect!
Even if I finally got everything to work I get this error worth mentioning:
>biocLite("Biobase", type="source")
BioC_mirror: http://bioconductor.org
On 12/23/2012 05:07 PM, Jesper Gådin wrote:
Thanks!
That helped the problem with the OrgDb warning. Unfortunately when I installed
the devel AnnotationDbi and BiocGenerics, I got around 40 other warnings during
the R CMD INSTALL , looking like this:
** R
** inst
** preparing package for lazy lo
Thanks!
That helped the problem with the OrgDb warning. Unfortunately when I
installed the devel AnnotationDbi and BiocGenerics, I got around 40 other
warnings during the R CMD INSTALL , looking like this:
** R
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, pr
Hi Jesper --
On 12/22/2012 05:09 PM, Jesper Gådin wrote:
Hello all,
#I have been attempting to create a slot in my own class foo that is
supposed to contain an OrgDb object from the AnnotationDbi-package.
Actually it works, but during my build I get this warning:
** R
** inst
** preparing pack
Hello all,
#I have been attempting to create a slot in my own class foo that is
supposed to contain an OrgDb object from the AnnotationDbi-package.
Actually it works, but during my build I get this warning:
** R
** inst
** preparing package for lazy loading
Warning: Class "OrgDb" is defined (with
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