Re: [Bioc-devel] 2 candidates for BiocGenerics

2015-03-24 Thread Hervé Pagès
Hi, The organism and species accessors (getters and setters) are now generic functions in BiocGenerics (>= 0.13.8). To my knowledge all the packages in devel (except rsbml) that define (or use) these accessors were modified to use these new generics. Please let me know if I forgot some. Some cl

Re: [Bioc-devel] 2 candidates for BiocGenerics

2015-03-19 Thread Laurent Gatto
On 16 March 2015 21:45, Hervé Pagès wrote: > Hi Laurent, > > On 03/10/2015 07:28 AM, Laurent Gatto wrote: >> >> Dear all, >> >> Two possible candidates for BiocGenerics: >> >>> GenomeInfoDb::species >> standardGeneric for "species" defined from package "GenomeInfoDb" >> >> function (x) >> standar

Re: [Bioc-devel] 2 candidates for BiocGenerics

2015-03-16 Thread Hervé Pagès
Hi Laurent, On 03/10/2015 07:28 AM, Laurent Gatto wrote: Dear all, Two possible candidates for BiocGenerics: GenomeInfoDb::species standardGeneric for "species" defined from package "GenomeInfoDb" function (x) standardGeneric("species") Methods may be defined for arguments: x Use showMet

[Bioc-devel] 2 candidates for BiocGenerics

2015-03-10 Thread Laurent Gatto
Dear all, Two possible candidates for BiocGenerics: > GenomeInfoDb::species standardGeneric for "species" defined from package "GenomeInfoDb" function (x) standardGeneric("species") Methods may be defined for arguments: x Use showMethods("species") for currently available ones. > Annotation