Re: [Bioc-devel] [ext] Re: RCAS build error on Nebbiolo2 - Missing BiocManager

2023-10-30 Thread Kern, Lori via Bioc-devel
rk 14263 From: Bioc-devel on behalf of bora.u...@mdc-berlin.de Sent: Monday, October 30, 2023 7:01 AM To: Herv� Pag�s ; bioc-devel@r-project.org ; Kasper Daniel Hansen Subject: Re: [Bioc-devel] [ext] Re: RCAS build error on Nebbiolo2 - Missing BiocManager Dear Herve & Kasper

Re: [Bioc-devel] [ext] Re: RCAS build error on Nebbiolo2 - Missing BiocManager

2023-10-30 Thread bora.u...@mdc-berlin.de
Dear Herve & Kasper, Thank you very much for your responses. The checkSeqDb(‘hg19’) function calls the BSgenome::available.genomes function which in turn calls “get_data_annotation_contrib_url“. The method tries to access `BiocManager::repositories