Dear Hervé Pagès,
Thank you very much for your email. This make me clear about the exactly
mean of maxgap and minoverlap. Previous what I think is that maxgap is the
max gap between the both ends of query and subject. Now I understand this
only is the situation when we set the parameter type="all"
On 07/25/2013 11:32 PM, Maintainer wrote:
Hi Jianhong,
On 07/24/2013 08:18 AM, Ou, Jianhong wrote:
Dear Hervé,
Is it possible to ignore minoverlap when people set maxgap greater than 0
and give a message for that?
That would make sense to me but we're probably overlooking something
because
Hi Jianhong,
On 07/24/2013 08:18 AM, Ou, Jianhong wrote:
Dear Hervé,
Is it possible to ignore minoverlap when people set maxgap greater than 0
and give a message for that?
That would make sense to me but we're probably overlooking something
because Michael has a unit test where 'minoverlap' a
Dear Hervé,
Is it possible to ignore minoverlap when people set maxgap greater than 0
and give a message for that?
Yours sincerely,
Jianhong Ou
LRB 670A
Program in Gene Function and Expression
364 Plantation Street Worcester,
MA 01605
On 7/23/13 5:35 PM, "Hervé Pagès" wrote:
>Hi,
>
>This
Hi,
This fails in Bioc-devel only and the following fix "seems" to address
the problem:
hpages@thinkpad:~/svn/bioconductor/Rpacks/IRanges$ svn diff
R/findOverlaps-methods.R
Index: R/findOverlaps-methods.R
===
--- R/findOve
