Re: [Bioc-devel] [bug] goseq fails when dplyr has been loaded

2014-07-24 Thread Keith Hughitt
Thanks, Martin! That is just what I was looking for. Cheers, Keith On Sun, Jul 13, 2014 at 8:32 AM, Martin Morgan wrote: > On 07/13/2014 05:24 AM, Keith Hughitt wrote: > >> (patch with above change...) >> >> > it's better to amend the NAMESPACE to include > > importFrom(AnnotationDbi, select

Re: [Bioc-devel] [bug] goseq fails when dplyr has been loaded

2014-07-13 Thread Martin Morgan
On 07/13/2014 05:24 AM, Keith Hughitt wrote: (patch with above change...) it's better to amend the NAMESPACE to include importFrom(AnnotationDbi, select) The codetoolsBioC package (available from the Bioconductor svn repository) suggests (this is not completely reliable) that there might

Re: [Bioc-devel] [bug] goseq fails when dplyr has been loaded

2014-07-13 Thread Keith Hughitt
(patch with above change...) On Sat, Jul 12, 2014 at 10:07 PM, Keith Hughitt wrote: > To reproduce, load goseq followed by dplyr and call the "goseq" function. > > Example output: > > Error in UseMethod("select") : > no applicable method for 'select' applied to an object of class > "c('GODb',

[Bioc-devel] [bug] goseq fails when dplyr has been loaded

2014-07-12 Thread Keith Hughitt
To reproduce, load goseq followed by dplyr and call the "goseq" function. Example output: Error in UseMethod("select") : no applicable method for 'select' applied to an object of class "c('GODb', 'AnnotationDb', 'envRefClass', '.environment', 'refClass', 'environment', 'refObject', 'AssayData')