frames isn't it? I notice that the
> Illum...anno... package itself depends on minfi, which seems
> unnecessary. But perhaps Kasper will comment.
>
> On Fri, May 21, 2021 at 5:32 AM xin wwa wrote:
>
>> Dear Bioconductor team,
>>
>> Hi, thank you for read
Dear Bioconductor team,
Hi, thank you for reading my email.
Our package has too many dependencies.
Therefore, we may want to reduce dependencies.
The main reason is that we use
minfi::getAnnotation("IlluminaHumanMethylation450kanno.ilmn12.hg19"). And
minfi package we used has lots of dependencies
Dear bioconductor team,
Recently, I want to upgrade our package EnMCB at release 3.12
I added some major changes to the package, however when I push the changes,
It showed that:
remote: FATAL: W refs/heads/RELEASE_3_12 packages/EnMCB whirlsyu DENIED by
fallthru
remote: error: hook declined to upd
Dear bioconductor team,
Recently, I want to upgrade our package EnMCB and add some functions.
However, the functions are based on a GitHub package ("Coxboost")
This package has been removed from CRAN, but I can find it on GitHub(
https://github.com/binderh/CoxBoost)
Therefore, can I depend on this
P.S. It only a bug on windows. It works fine on MacOS and ubuntu.
Xin Yu
Ph.D. student of Biomedical Informatics
College of Bioinformatics - Huazhong Agricultural University
whirl...@gmail.com
yu...@webmail.hzau.edu.cn
tel: (+86) 186-5313-5769
xin wwa 于2020年12月29日周二 下午11:09写道：
> Also, I tes
atics
College of Bioinformatics - Huazhong Agricultural University
whirl...@gmail.com
yu...@webmail.hzau.edu.cn
tel: (+86) 186-5313-5769
xin wwa 于2020年12月29日周二 下午5:24写道：
> Dear bioconductor team,
>
> recently I found that under R 4.0.3 I can not insta
Dear bioconductor team,
recently I found that under R 4.0.3 I can not install the package
IlluminaHumanMethylation450kanno.ilmn12.hg19,
It froze at the testing message.
I tried this on 3.6.3, It will successfully be installed.
However, It will be failed if you are using R 4.0.2+
It will let the de
Agricultural University
whirl...@gmail.com
yu...@webmail.hzau.edu.cn
tel: (+86) 186-5313-5769
xin wwa 于2020年12月23日周三 下午8:26写道：
> Dear Lori,
>
> Thank you for your email, we currently are working on upgrading our
> package.
> It should be work fine after our update.
>
> Best reg
; Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Bioc-devel on behalf of xi
Dear Bioconductor team,
We want to include the CoxBoost package;
But I found that this package is not available in Bioconductor or R cran.
Is there a way to include this package?
Xin Yu
Ph.D. student of Biomedical Informatics
College of Bioinformatics - Huazhong Agricultural University
whirl...@g
Dear
When the platform built our package EnMCB, we got an error only on windows
as following:
ERROR: dependencies 'minfi',
'IlluminaHumanMethylation450kanno.ilmn12.hg19' are not available for
package 'EnMCB'
Those dependencies were removed from 3.13 on windows?
Xin Yu
Ph.D. student of Biomedical
Hello BioConductor team,
We have a build error problem. We tested our package locally and find
that the function cph in cms packages has changed recently which caused the
error.
We changed the function and tested in our environment and submitted it to
git.bioconductor.org, however the error report
Dear Manager,
I checked my packages version recently and it was changed as my last
comment,
Could you please tell me that I can make the changes again?
I push the changes on master and RELEASE_3_11 again with no errors.
But the changes took no effect on the packages at the repositories on
Biocond
13 matches
Mail list logo
