Hi Lori,
I agree with Michael. I for myself do not need the UNIGENE field. The
mot frequent columns that I use are:
ENTREZID, REFSEQ, ENSEMBL, SYMBOL, GENENAME, UNIPROT, gene_id and GO.
Best,
Tobias
Am 30.04.20 um 08:46 schrieb Stadler, Michael:
Hi Lori
Just my two-cents: I would not miss
laps().
>
> Or pcompare(), which should be even faster. But only if you are not
> afraid to go low-level. See ?rangeComparisonCodeToLetter for the meaning
> of the codes returned by pcompare().
>
> H.
>
> On 1/29/20 08:01, Michael Lawrence via Bioc-devel wrote:
>&
Hello,
I have two big GRanges objects and want to search for an overlap of the
first range of query with the first range of subject. Then take the
second range of query and compare it with the second range of subject
and so on. Here an example of my problem:
# GRanges objects
query <- GRang
LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] dummyData_0.1.0
loaded via a namespace (and not attached):
[1] compiler_3.6.1 tools_3.6.1 ya
because of lazy loading.
On Thu, Jan 9, 2020 at 4:40 PM Pages, Herve wrote:
On 1/9/20 13:00, web working wrote:
Hi Herve,
thank you for your detailed answer. I guess I have expressed myself
unclear. The BED files were just examples for data I store in the
inst/extdata folder. Based on t
s instead of RData files is the better solution here.
My question is if my storage of the RData objects (or RDS objects) in
the inst/extdata directory is ok for an Bioconductor package.
Best,
Tobias
Am 09.01.20 um 15:45 schrieb Richard Virgen-Slane:
>
> I may be missing a point, but how a
rimentHubData package for more information
about this.
Hope this helps,
H.
On 1/9/20 04:45, web working wrote:
Dear all,
I am currently developing a software package (dummySoftware) and a data
package (dummyData) and I am a bit confused in where to store my RData
files in the data package. Here my
Dear all,
I am currently developing a software package (dummySoftware) and a data package
(dummyData) and I am a bit confused in where to store my RData files in the
data package. Here my situation:
I want to store some software package objects (new class objects of the
software package) in t
Hi together,
I am struggling a bit with the roxygen function import. Do you know how
to add the dplyr %>% functionality to a function without importing the
hole dplyr package?
This is my current solution:
#' Return first 10 entries
#'
#' @param mtcars a \code{data.frame} object
#'
#' @import
Rd files.
Martin
On 2/14/19, 4:08 AM, "Bioc-devel on behalf of web working"
wrote:
Hi,
I am struggling a bit with a R generic function. I build a generic and
set two implementations of the generic with two different signatures as
input. Both implementations
Hi,
I am struggling a bit with a R generic function. I build a generic and
set two implementations of the generic with two different signatures as
input. Both implementations of the generic produce the same output but
have a different input. During devtools::check() I get the following error:
3636
2 6 122.28571
3 8 209.21429
where R recognizes symbols in the formula ~ as intentionally unresolved. The
wizards on the list might point to constructs in the rlang package.
Martin
On 2/12/19, 2:35 AM, "Bioc-devel on behalf of web working"
wrote:
Hi,
ecksrc.html
>
> .
>
> Mike
>
> On Tue, 12 Feb 2019 at 08:35, web working <mailto:webwork...@posteo.de>> wrote:
>
> Hi,
>
> I am developing a Bioconductor package and can not get rid of some
> warning messages. Dur
Hi,
I am developing a Bioconductor package and can not get rid of some
warning messages. During devtools::check() I get the following warning
messages:
...
summarizeDataFrame: no visible binding for global variable ‘name’
summarizeDataFrame: no visible binding for global variable ‘gene’
summa
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