Re: [Bioc-devel] Unable to reproduce error!

2017-10-30 Thread laurent jacob
;ENTREZID:1147" >>> >>> in code chunk 10 you'd calculated the intersection of these genes with >>> the >>> row.names of the sample expression set >>> >>> intersect(genes, row.names(exprs(all))) >>>> >>> charact

Re: [Bioc-devel] rtracklayer: problem with formatting the output of ucscTableQuery

2013-10-10 Thread laurent jacob
gt; limits in place that truncate the response. rtracklayer has little way of > knowing whether the user is requesting too many records. Just download the > mappability as a bigwig file via FTP and query that with rtracklayer, > instead. > > > On Wed, Oct 9, 2013 at 9:45 AM,

[Bioc-devel] rtracklayer: problem with formatting the output of ucscTableQuery

2013-10-09 Thread laurent jacob
ort(FileForFormat(con, format), ...) 5: import(text = output, format = format, asRangedData = asRangedData, seqinfo = seqinfo(range(object))) 4: import(text = output, format = format, asRangedData = asRangedData, seqinfo = seqinfo(range(object))) 3: .local(object, ...) 2: track(query.full