Re: [Bioc-devel] Logolas package broken for R (3.4) users

2018-08-30 Thread kushal kumar dey
ed. See the 'AMI IDs' section: >> >> https://www.bioconductor.org/help/bioconductor-cloud-ami/#ami_ids >> >> Valerie >> >> >> On 08/27/2018 11:48 AM, kushal kumar dey wrote: >> >> Hi, >> >> I just found based on user reports

[Bioc-devel] Logolas package broken for R (3.4) users

2018-08-27 Thread kushal kumar dey
Hi, I just found based on user reports that the old version of my package Logolas for R 3.4 and Bioc 3.6 is broken. It does install fine but the main function does not run. Everything seems to be fine however for R 3.5 and Bioc 3.7. I would like to produce either an error message if someone < R 3.

[Bioc-devel] Common Windows build problems for `CountClust` and `Logolas`

2018-05-03 Thread kushal kumar dey
Hi, Two of my packages - CountClust and Logolas - are showing the same error in Windows build. http://bioconductor.org/checkResults/release/bioc-LATEST/Logolas/ http://bioconductor.org/checkResults/release/bioc-LATEST/CountClust/ The problem has been picked up inside the last day as the build s

Re: [Bioc-devel] Package update not showing on Bioc 3.6 webpage

2017-11-02 Thread kushal kumar dey
ushal On 1 November 2017 at 16:45, kushal kumar dey wrote: > Thanks so much for the help. I did manage to push with the SSH protocol. > Will wait till the next build to see if it went through. > > Best > > Kushal > > On 1 November 2017 at 16:18, Turaga, Nitesh > wrote

Re: [Bioc-devel] Package update not showing on Bioc 3.6 webpage

2017-11-01 Thread kushal kumar dey
gt; zuAzthAPzFuskZDHahws9sPUtWMxioI6D5ZktVOb/QJbDJdFHFPXcd8l90wRJN0eGJXX9ex > cJBDU57ufEgDBx9vGv85GTwJjP4UQYLyjDIap2CbrdC+7nJ95fa7YcNUj2znVFcrNnkW9 > > > > Best, > > > > Nitesh > > > > > >> On Nov 1, 2017, at 2:23 PM, kushal kumar dey wrote: > >

Re: [Bioc-devel] Package update not showing on Bioc 3.6 webpage

2017-11-01 Thread kushal kumar dey
typically done with 'git cherry-pick' as documented here: > > > https://bioconductor.org/developers/how-to/git/bug-fix-in- > release-and-devel/ > > Cheers, > H. > > > On 10/30/2017 02:41 PM, kushal kumar dey wrote: > >> Hi all, >> >> I am the aut

[Bioc-devel] Package update not showing on Bioc 3.6 webpage

2017-10-30 Thread kushal kumar dey
Hi all, I am the author and maintainer of the CountClust package. I recently submitted an update (version 1.5.1) to the package through Bioconductor Git and I can access this updated version when I clone the source repository git clone https://git.bioconductor.org/packages/CountClust However, t